Image Analysis Workstations

Image analysis workstations at LMU.
AI Workstation

AI Workstation is well suited for image Analysis which benefits for multiple processors, lots of central memory and modern CUDA capable graphics cards.

Software

Imaris Suite
InCarta for data from MD Micro
CellPose
MicroSAM (Segment Anything for Microscopy)
QPath
Fiji x64 with CUDA capability
Matlab
 

 

Room 2036 c

HELMI 3D VM

HELMI 3D VM is a virtual machine which is used from your own workstation by Omnissa Horizon Client. Instructions for connection are in LMU wiki. At the moment major software for the virtual machine are full Imaris installation and Fiji.  Workstation has CUDA capability so FIji plugins that are made for CUDA computing works there. Capabilities is generally less than other workstations so this is a good tool if you don't have a very big data set. 

 

3D Work­sta­tion

3D workstation is a powerful workstation for 3D image analysis and processing for large data sets. This workstation has an Imaris software package. ImarisXT module allows you to use Matlab and Python scripts and Fiji modules within Imaris.  Huygens Professional for deconvolution and image fusions.

Soft­ware

Bitplane Imaris suite with Batch coordinator
Huygens Professional
Fiji 64x
Matlab 64x

Room 2036c

LS Work­sta­tion

LS workstation is an older workstation with Linux. It has CUDA capable graphic card with 8 GB memory and 256GB Central memory.  

 

Under Installation

 

Soft­ware

 

Room 2036c