Image Analysis Workstations

Image analysis workstations at LMU.
AI Workstation

AI Workstation is well suited for image Analysis which benefits for multiple processors, lots of central memory and modern CUDA capable graphics card.

Software

Imaris Suite with Batch 
InCarta for data from MD Micro
CellPose and Napari
MicroSAM (Segment Anything for Microscopy)
Fiji x64 with CUDA capability
CellProfiler + CellProfiler Analyst
Matlab
Zeiss Zen Lite 3.13

Room 2036c
4D Work­sta­tion

4D workstation is a powerful workstation for 3D image analysis and processing for large data sets. This workstation has an Imaris software package. ImarisXT module allows you to use Matlab and Python scripts and Fiji modules within Imaris.  Huygens Professional for deconvolution and image fusions.

Soft­ware

Bitplane Imaris suite with Batch 
QuPath
CellProfiler + CPA
Fiji 
Matlab
Microspy Image Browser (Matlab version)
Zeiss Zen Lite 3.13
Leica LAS X 4 (full version with FLIM analysis)

Room 2036c
HBI VM

HBI VM is a virtual machine which is used from your own workstation by Omnissa Horizon Client. are in LMU wiki. At the moment major software for the virtual machine are full Imaris installation, Fiji and Cell Profiler + CP Analyst and QuPath.  Workstation has CUDA capability so FIji plugins that are made for CUDA computing works there. Capabilities is generally less than other workstations so this is a good tool if you don't have a very big data set. 

 
Linux work­sta­tions

Our old workstations are recycled to continue service with Linux operating system.

LS workstation has CUDA capable graphic card with 8 GB memory and 256GB Central memory.  

3D workstation has NVIDIA Quadro RTX8000 Graphic Card with 48GB of GDDR6 memory, and 384GB Central memory.

 

Under Installation

 

Soft­ware

 

Room 2036c and d