Software

All our software is open. A few of our major development projects are listed below.

Anduril (ANalysis of Data Using Rapid Integration of aLgorithms) is an opensource component-based workflow framework for systematic, flexible and efficient scientific data analysis, particularly in the field of high-throughput experiments in biomedical research. It includes components for expression, SNP, ChIP-seq and exon microarray analysis.

Anduril website

 

Anima is an image analysis workflow platfrom built on top of Anduril. Anima acts as a superplatform for the existing imaging applications, and can run components and software written many languages. In addition Anima provides API to the popular batch imaging environments: Fiji, CellProfiler and ImageMagick.

Anima website

GROK (Genomic Region Operation Toolkit) is "Swiss Army knife" library for processing genomic interval data. GROK operates ongenomic regions, annotated chromosomal intervals that represent sequencing short reads, gene locations, ChIP-seq peaks or other genomic features. Applications of GROK include file format conversions, set operations, overlap queries, and filtering and transformation operations.

GROK website