Publications
Selected and latest publications.
Selected publications

  1. Zhang K, Erkan EP, Jamalzadeh S, Dai J, Andersson N, Kaipio K, Lamminen T, Mansuri N, Huhtinen K, Carpén O, Hietanen S, Oikkonen J, Hynninen J, Virtanen A, Häkkinen A, Hautaniemi S, Vähärautio A. Longitudinal single-cell RNA-seq analysis reveals stress-promoted chemoresistance in metastatic ovarian cancer. Science Advances. 2022 Feb 25;8(8).

  2. Oikkonen J, Zhang K, Salminen L, Schulman I, Lavikka K, Andersson N, Ojanperä E, Hietanen S, Grénman S, Lehtonen R, Huhtinen K, Carpén O, Hynninen J, Färkkilä A, Hautaniemi S. Prospective longitudinal ctDNA workflow reveals clinically actionable alterations in ovarian cancer. JCO Precision Oncology, 2019 :3, 1-12.

  3. Alkodsi A, Cervera A, Zhang K, Louhimo R, Meriranta L, Pasanen A, Leivonen S-K, Holte H, Leppä S, Lehtonen R, Hautaniemi S. Distinct subtypes of diffuse large B-cell lymphoma defined by hypermutated genes. Leukemia, 2019, 33(11):2662-2672.

  4. Cervera A, Rantanen V, Ovaska K, Laakso M, Nuñez-Fontarnau J, Alkodsi A, Casado J, Facciotto C, Häkkinen A, Louhimo R, Karinen S, Zhang K, Lavikka K, Lyly L, Singh MP, Hautaniemi S. Anduril 2: Upgraded large-scale data integration framework. Bioinformatics, 2019, 35(19):3815-3817

  5. Isoviita VM, Salminen L, Azar J, Lehtonen R, Roering P, Carpén O, Hietanen S, Grénman S, Hynninen J, Färkkilä A, Hautaniemi S. Open source infrastructure for health care data integration and machine learning analyses. JCO Clinical Cancer Informatics. 2019, 3:1-16.
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