Publications from the IMMENs groups
Published articles
- Follain G, Ghimire S, Pylvänäinen JW, Vaitkevičiūtė M, Hidalgo-Cenalmor I, Wurzinger D, Guzmán C, Conway JRW, Dibus M, Härkönen J, Oikari S, Rilla K, Salmi M, Ivaska J, Jacquemet G. Fast label-free live imaging with FlowVision reveals key principles of cancer cell arrest on endothelial monolayers. EMBO J 2026;45:1381–421. doi:
- Lerche M, Mathieu M, Hamidi H, Chastney M, Jacquemet G, Bruininks BMH, Kaptan S, Malerød L, Pedersen NM, Brech A, Matoba N, Sato Y, Vattulainen I, Roca-Cusachs P, Perez F, Boncompain G, Miserey S, Ivaska J. Regulation of cell dynamics by rapid integrin transport through the biosynthetic pathway. J Cell Biol 2026;225:e202508155. doi:
- Rivera Pineda MX, Lehtimäki J, Jacquemet G. Customizable FDM-based zebrafish larva mold for live imaging. Biol Open 2026;15:bio062406. doi:
- Volpe G, Wählby C, Tian L, Hecht M, Yakimovich A, Monakhova K, Waller L, Sbalzarini IF, Metzler CA, Xie M, Zhang K, Lenton ICD, Rubinsztein-Dunlop H, Brunner D, Bai B, Ozcan A, Midtvedt D, Wang H, Li T, Sladoje N, Lindblad J, Smith JT, Ochoa M, Barroso M, Intes X, Qiu T, Yu L-Y, You S, Liu Y, Ziatdinov MA, Kalinin S V, Sheridan A, Manor U, Nehme E, Goldenberg O, Shechtman Y, Moberg HK, Langhammer C, Špačková B, Helgadottir S, Midtvedt B, Argun A, Thalheim T, Cichos F, Bo S, Hubatsch L, Pineda J, Manzo C, Bachimanchi H, Selander E, Homs-Corbera A, Fränzl M, Haan K de, Rivenson Y, Korczak Z, Adiels CB, Mijalkov M, Veréb D, Chang Y-W, Pereira JB, Matuszewski D, Kylberg G, Sintorn I-M, Caicedo JC, Cimini BA, Bell MAL, Saraiva BM, Jacquemet G, Henriques R, Ouyang W, Le T, Gómez-de-Mariscal E, Sage D, Muñoz-Barrutia A, Lindqvist EJ, Bergman J. Roadmap on deep learning for microscopy. J Physics: Photonics 2026;8:012501. doi:
Preprints
- Grobe H, Pineda MXR, Ghimire S, Laisne M-C, Nylund A, Vaitkevičiūtė M, Vihinen H, Prakash A, Tammi J, Ojalill M, Boström P, Hartiala P, Englund J, Peuhu E, Jokitalo E, Jacquemet G. Filopodia-mediated trans-endocytosis. bioRxiv 2026:2026.02.09.703982. doi:
- Chastney MR, Pink A, Härkönen J, Follain G, Stüve V, Pylvänäinen JW, Haapanen-Saaristo A-M, Villman J, Vaitkevičiūtė M, Scita G, Paatero I, Jacquemet G, Giavazzi F, Saharinen P, Ivaska J. Scaffold protein SHANK3 regulates endothelial cell motility and tissue mechanics. bioRxiv 2026:2026.04.12.717721. doi:
- Hidalgo-Cenalmor I, Pineda MXR, Saraiva BM, Henriques R, Jacquemet G. Packaging Jupyter notebooks as installable desktop apps using LabConstrictor. arXiv 2026. doi:
- Saraiva BM, Hidalgo-Cenalmor I, Brito AD, Martínez D, Shakespeare T, Jacquemet G, Henriques R. EZInput: A Cross-Environment Python Library for Easy UI Generation in Scientific Computing. arXiv 2026. doi: