Publications from the IMMENs groups
Published articles
- Follain G, Ghimire S, Pylvänäinen JW, Vaitkevičiūtė M, Hidalgo-Cenalmor I, Wurzinger D, Guzmán C, Conway JRW, Dibus M, Härkönen J, Oikari S, Rilla K, Salmi M, Ivaska J, Jacquemet G. Fast label-free live imaging with FlowVision reveals key principles of cancer cell arrest on endothelial monolayers. EMBO J 2026;45:1381–421. doi:
- Holub E, Hondl N, Lin K, Parikainen M, Sahlgren C, Lendl B, Ramer G. Investigating Spectral Biomarker Candidates for Migratory Potential in Cancer Cells Using Micro-FTIR and O-PTIR Spectroscopy. ASC Meas Sci Au 2026;6:96-106.
- Lerche M, Mathieu M, Hamidi H, Chastney M, Jacquemet G, Bruininks BMH, Kaptan S, Malerød L, Pedersen NM, Brech A, Matoba N, Sato Y, Vattulainen I, Roca-Cusachs P, Perez F, Boncompain G, Miserey S, Ivaska J. Regulation of cell dynamics by rapid integrin transport through the biosynthetic pathway. J Cell Biol 2026;225:e202508155. doi:
- Parikainen M, Suwal U, Rappu P, Heino J, Sahlgren CM. Jagged1 regulates extracellular matrix deposition and remodeling in triple-negative breast cancer. Sci Adv 2026;12:eaea9562.
- Ristori T, Thuret R, Hooker E, Quicke P, Sanlidag S, Lanthier K, Ntumba K, Aspalter IM, Uroz M, Sahlgren CM, Herbert SP, Chen CS, Larrivée B, Bentley K. Bmp9 regulates Notch signaling and the temporal dynamics of angiogenesis via Lunatic Fringe. Dev Cell 2026;61:837-853.
- Rivera Pineda MX, Lehtimäki J, Jacquemet G. Customizable FDM-based zebrafish larva mold for live imaging. Biol Open 2026;15:bio062406. doi:
- Suarez Rodriguez F, Virtanen N, Kiviluoto E, Driessen RCH, Zhao F, Bouten CVC, Stassen OMJA, Sahlgren CM. A noncanonical role for Jagged1 in endothelial mechanotransduction. FEBS J 2026;
- Volpe G, Wählby C, Tian L, Hecht M, Yakimovich A, Monakhova K, Waller L, Sbalzarini IF, Metzler CA, Xie M, Zhang K, Lenton ICD, Rubinsztein-Dunlop H, Brunner D, Bai B, Ozcan A, Midtvedt D, Wang H, Li T, Sladoje N, Lindblad J, Smith JT, Ochoa M, Barroso M, Intes X, Qiu T, Yu L-Y, You S, Liu Y, Ziatdinov MA, Kalinin S V, Sheridan A, Manor U, Nehme E, Goldenberg O, Shechtman Y, Moberg HK, Langhammer C, Špačková B, Helgadottir S, Midtvedt B, Argun A, Thalheim T, Cichos F, Bo S, Hubatsch L, Pineda J, Manzo C, Bachimanchi H, Selander E, Homs-Corbera A, Fränzl M, Haan K de, Rivenson Y, Korczak Z, Adiels CB, Mijalkov M, Veréb D, Chang Y-W, Pereira JB, Matuszewski D, Kylberg G, Sintorn I-M, Caicedo JC, Cimini BA, Bell MAL, Saraiva BM, Jacquemet G, Henriques R, Ouyang W, Le T, Gómez-de-Mariscal E, Sage D, Muñoz-Barrutia A, Lindqvist EJ, Bergman J. Roadmap on deep learning for microscopy. J Physics: Photonics 2026;8:012501. doi:
Preprints
- Grobe H, Pineda MXR, Ghimire S, Laisne M-C, Nylund A, Vaitkevičiūtė M, Vihinen H, Prakash A, Tammi J, Ojalill M, Boström P, Hartiala P, Englund J, Peuhu E, Jokitalo E, Jacquemet G. Filopodia-mediated trans-endocytosis. bioRxiv 2026. doi:
- Chastney MR, Pink A, Härkönen J, Follain G, Stüve V, Pylvänäinen JW, Haapanen-Saaristo A-M, Villman J, Vaitkevičiūtė M, Scita G, Paatero I, Jacquemet G, Giavazzi F, Saharinen P, Ivaska J. Scaffold protein SHANK3 regulates endothelial cell motility and tissue mechanics. bioRxiv 2026. doi:
- Hidalgo-Cenalmor I, Pineda MXR, Saraiva BM, Henriques R, Jacquemet G. Packaging Jupyter notebooks as installable desktop apps using LabConstrictor. arXiv 2026. doi:
- Saraiva BM, Hidalgo-Cenalmor I, Brito AD, Martínez D, Shakespeare T, Jacquemet G, Henriques R. EZInput: A Cross-Environment Python Library for Easy UI Generation in Scientific Computing. arXiv 2026. doi:
- Sanlidag S, Virtanen N, Hoursan H, Ristori T, Sjöqvist M, Loerakker S, Sahlgren C. Receptor-stoichiometry predicts artery-typical vulnerability to altered Notch signaling during smooth muscle differentiation. bioRxiv 2025.