FIMM Genomics provides open-access DNA/RNA sequencing and genotyping services for researchers in Finland and abroad. Our primary focus is in medical genomics and transcriptomics including primary analysis of the sequencing data.
We help you design experiments and provide tailored solutions for basic and translational research. Our experienced staff is ready to implement novel technologies and assays to match your needs.
Head of sequencing unit Pekka Ellonen+358 50 415 4481
NGS Transcriptomics Pirkko Mattila+358 50 317 5434
Head of genotyping unit Kati Donner+358 50 318 5677
Biomedicum Helsinki 2, Tukholmankatu 8, Meilahti campus, Helsinki
2nd floor, F-wing
Whole Genome Sequencing
Gene Panels & Custom Gene panels
Tailored NGS amplicons / biomarkers
NGS library preparation
T-cell receptor sequencing (hsTCRB)
NGS target enrichment / custom gene panels
Custom NGS assay development - ask more
Whole Genome Genotyping
Whole Genome Methylation analysis
Targeted SNP Genotyping
Targeted Methylation analysis
Cell line authentication
Mouse speed congenics
Illumina NovaSeq6000 sequencing
Illumina HiSeq2500 sequencing
Illumina MiSeq sequencing
Sanger Sequencing & Fragment Analysis (ABI3730xl DNA Analyzer)
Consultation and project planning
The research infrastructure is supported by University of Helsinki (HiLIFE) and Biocenter Finland. Service pricing follows University of Helsinki pricing guidelines.
Below some examplary prices are shown (University of Helsinki internal pricing, VAT0%). We will tailor NGS and genotyping services for your needs and pricing will vary accordingly. Please contact us for experiment design and pricing details.
|Exome sequencing, germline||starting from 770e/sample||mean coverage ~50X, 90% target bases with at least 20X coverage||Price varies depending on the desired sequencing depth and preferred exome kit||Primary analysis included (FASTQ, BAM, VCF files)|
|Exome sequencing, somatic||starting from 1124 €/sample||mean coverage ~130X,90% target bases with at least 50X coverage||Price varies depending on the desired sequencing depth and preferred exome kit||Primary analysis included (FASTQ, BAM, VCF files)|
NGS library preparations for DNA are about 50..100€/sample. Price varies depending on NGS application, kit vendor, sample type and amount of DNA available
|Transcriptome||165.61€||Scriptseqv2||~60M reads of sequencing required, see sequencing run modes below||Amount of sequencing can be adjusted to project needs|
|Gene expression /3´counting||51.64 €||Lexogen QuantSeq||~5M reads of sequencing required, see sequencing run modes below||Amount of sequencing can be adjusted to project needs|
|smallRNA-seq / miRnome||136.72 €||TruSeq smallRNA||~15M reads of sequencing required, see sequencing run modes below||Amount of sequencing can be adjusted to project needs|
Frequently requested sequencing run modes:
|SBS version||Mode||Reads total (M)||Typical Yield (Gb)||Yield after barcode removal (Gb)||HY price / lane||Cost/1M reads|
|Illumina HiSeq HO v4||v4||PE100||475||47.5||43.7||€2,037.33||4.05€|
|Illumina HiSeq Rapid||Rapid v2||PE100||532||55||50.7||€3,291.20||6.18€|
|Illumina HiSeq Rapid||Rapid v2||PE250||532||133||128.7||5 925.20 €||11.13€|
|Illumina MiSeq||v2||PE150 v2||32||4.7||4.4||1 249.12 €||42.10€|
|Illumina MiSeq||v2||PE250 v2||32||8||7.7||€1,367.12||45.78€|
|Illumina MiSeq||v3||PE300 v3||50||15||14.6||€1,754.12||45.78€|
For list of all available sequencing modes please browse sequencing instruments above or contact laboratory staff.
Yields are average yield from manufacturer's specifications. Real life performance varies depending on sample and library type and quality.
|Global screening array||20-32 € per sample||~640 000 markers|
For projects with ≤4608 samples the price is 32 € per sample. For projects with >4608 samples the price is 29 € per sample.