FIMM Genomics | FIMM Genomics/FuGU | BIDGEN | |
Short read sequencing | MiSeqNovaSeq6000 | MiSeqFGx, NextSeq500 | AVITI, MiSeq, iSeq100 |
Long read sequencing | Oxford Nanopore Promethion-2-Solo | PacBio Revio, Oxford Nanopore Promethion-2-Solo | |
Capillary sequencing / fragment analysis | ABI3730xl | ABI3500 |
FIMM Genomics | FIMM Genomics/FuGU | BIDGEN | |
Nucleic acid QC | Labchip GX Touch 2100 Bioanalyzer Victor NIVO BluePippin Qubit NanoDrop |
4200 TapeStation 2100 Bioanalyzer Victor NIVO Qubit NanoDrop |
2100 Bioanalyzer Fragment analyzer BluePippin Qubit NanoDrop |
NGS library preparation |
x | x | x |
Target enrichment / hybridization capture |
x | x | x |
Metagenomics sequencing | x | x | x |
De Novo genome sequencing |
x | ||
Whole Genome Sequencing human and model organisms (WGS) |
x | x | |
Whole Genome Sequencing non-model organisms |
x | x | |
Human exome sequencing (WES) |
x | x | |
Custom targeted sequencing / panels | x | x | x |
Transcriptomics / full length RNA-seq | x | x | x |
NGS Gene expression / 3' counting |
x | x | |
NGS smallRNA / miRNA analysis |
x | x | x |
NGS targeted RNA panels | x | ||
NGS single-cell RNA-seq | FIMM SCA Unit | x | |
Tailored amplicon sequencing | x | x | |
T-cell receptor sequencing (hsTCRB) |
x | ||
NGS Mouse speed congenics | x | ||
Cell line identification (fragment analysis) |
x | ||
Custom NGS assay development | x | x | x |
FIMM Genomics/FuGU | |
Protein Biomarker Assays | Olink |
Gene expression panels | NanoString |
FIMM Genomics | FIMM Genomics/FuGU | BIDGEN | |
Resequencing / variant calling analysis | Included in NGS service | As a separate service | |
Copy-number alteration discovery analysis | |||
RNA-seq and miRNA-seq data-analysis | Included in NGS service | As a separate service | |
Deep amplicon sequencing data analysis | Included in NGS service | As a separate service | |
Differential expression data-analysis | As a separate service | ||
Metagenome analysis | As a separate service | As a separate service | |
Genome assembly (de novo) | As a separate service | ||
Genome annotation | |||
Assorted web servers |