Services provided by HGI

HGI platform delivers services through 2 core laboratories. Both laboratories have distinct service portfolio and matching instrumentation. Following tables summarize available technologies and services.
Sequencing technologies
  FIMM Genomics FIMM Genomics/FuGU         BIDGEN       
Short read sequencing  MiSeqNovaSeq6000 MiSeqFGx, NextSeq500 AVITI, MiSeq, iSeq100
Long read sequencing Oxford Nanopore Promethion-2-Solo   PacBio Revio, Oxford Nanopore Promethion-2-Solo
Capillary sequencing / fragment analysis ABI3730xl   ABI3500
NGS Services
  FIMM Genomics FIMM Genomics/FuGU BIDGEN
Nucleic acid QC Labchip GX Touch
2100 Bioanalyzer
Victor NIVO
BluePippin
Qubit
NanoDrop		 4200 TapeStation
2100 Bioanalyzer
Victor NIVO
Qubit
NanoDrop		 2100 Bioanalyzer
Fragment analyzer
BluePippin
Qubit
NanoDrop
NGS library
preparation		 x x x
Target enrichment /
hybridization capture		 x x x
Metagenomics sequencing x x x
De Novo
genome sequencing		     x
Whole Genome Sequencing
human and model organisms (WGS)		 x x  
Whole Genome Sequencing
non-model organisms		   x x
Human exome sequencing
(WES)		 x x  
Custom targeted sequencing / panels x x x
Transcriptomics / full length RNA-seq x x x
NGS Gene expression /
3' counting		 x x  
NGS smallRNA /
miRNA analysis		 x x x
NGS targeted RNA panels x    
NGS single-cell RNA-seq FIMM SCA Unit   x
Tailored amplicon sequencing x   x
T-cell receptor sequencing
(hsTCRB)		 x    
NGS Mouse speed congenics x    
Cell line identification
(fragment analysis)		 x    
Custom NGS assay development x x x
Targeted biomarker services
  FIMM Genomics/FuGU
Protein Biomarker Assays Olink
Gene expression panels NanoString

 
Bioinformatics services
  FIMM Genomics FIMM Genomics/FuGU BIDGEN
Resequencing / variant calling analysis Included in NGS service As a separate service  
Copy-number alteration discovery analysis      
RNA-seq and miRNA-seq data-analysis Included in NGS service As a separate service  
Deep amplicon sequencing data analysis Included in NGS service As a separate service  
Differential expression data-analysis   As a separate service  
Metagenome analysis   As a separate service As a separate service
Genome assembly (de novo)     As a separate service
Genome annotation      
Assorted web servers