Services provided by HGI

HGI platform delivers services through 2 core laboratories. Both laboratories have distinct service portfolio and matching instrumentation. Following tables summarize available technologies and services.
Sequencing technologies
  FIMM Genomics FIMM Genomics/FuGU         BIDGEN       
Short read sequencing  , , ,
Long read sequencing   ,
Capillary sequencing / fragment analysis  
NGS Services
  FIMM Genomics FIMM Genomics/FuGU BIDGEN
Nucleic acid QC




NanoDrop



NanoDrop



NanoDrop
NGS library
preparation		 x x x
Target enrichment /
hybridization capture		 x x x
Metagenomics sequencing x x x
De Novo
genome sequencing		     x
Whole Genome Sequencing
human and model organisms (WGS)		 x x  
Whole Genome Sequencing
non-model organisms		   x x
Human exome sequencing
(WES)		 x x  
Custom targeted sequencing / panels x x x
Transcriptomics / full length RNA-seq x x x
NGS Gene expression /
3' counting		 x x  
NGS smallRNA /
miRNA analysis		 x x x
NGS targeted RNA panels x    
NGS single-cell RNA-seq   x
Tailored amplicon sequencing x   x
T-cell receptor sequencing
(hsTCRB)		 x    
NGS Mouse speed congenics x    
Cell line identification
(fragment analysis)		 x    
Custom NGS assay development x x x
Targeted biomarker services
  FIMM Genomics/FuGU
Protein Biomarker Assays
Gene expression panels

 
Bioinformatics services
  FIMM Genomics FIMM Genomics/FuGU BIDGEN
Resequencing / variant calling analysis Included in NGS service As a separate service  
Copy-number alteration discovery analysis      
RNA-seq and miRNA-seq data-analysis Included in NGS service As a separate service  
Deep amplicon sequencing data analysis Included in NGS service As a separate service  
Differential expression data-analysis   As a separate service  
Metagenome analysis   As a separate service As a separate service
Genome assembly (de novo)     As a separate service
Genome annotation      
Assorted web servers