Figure: Current status of the pipelines for different methods, October 10 2023. For all methods, we go from samples to species lists. For all methods, new samples are coming in all the time, and the current status refers to the status of the first samples. Malaise samples have sequencing, imaging and initial bioinformatics done, but we will be performing more full bioinformatics before making actual species lists. Cyclone samples are going through drying and cleaning, and the first samples are being sequenced. They will still need to go through the bioinformatics stage. Soil samples have been freeze dried and ground, and have started sequencing. They will still need to go through the bioinformatics stage. Camera trap data is uploading, and we now in the annotation phase. After annotation, we will perform automated species classification to arrive at species lists. Audio data is uploading, and we are currently in the annotation phase. After annotation, we will perform automated species classification to arrive at species lists.
SLU = Swedish University of Agricultural Sciences in Uppsala
UH = University of Helsinki
JyU = Jyväskylä University
CBG = Centre for Biodiversity Genomics