A novel stand-alone pipeline for identifying viruses in host-associated or environmental samples. The Unix based pipeline for automated assembling and taxonomic profiling of NGS libraries has been developed as a collection of C++, Perl and R scripts.
Plyusnin,I., Kant,R., Jaaskelainen,A.J., Sironen,T., Holm,L., Vapalahti,O. and Smura,T. (2020) Novel NGS Pipeline for Virus Discovery from a Wide Spectrum of Hosts and Sample Types. Virus Evolution, veaa091, https://doi.org/10.1093/ve/veaa091