ClusTRace is a bioinformatic pipeline for high level handling and phylogenetic/cluster analysis of virus sequences.
ClusTRace was created as an aid for COVID-19 transmission chain tracing.
Plyusnin, I., Truong Nguyen, P.T., Sironen, T. et al. ClusTRace, a bioinformatic pipeline for analyzing clusters in virus phylogenies. BMC Bioinformatics 23, 196 (2022).