Services provided by HGI

HGI platform delivers services through 3 core laboratories and 2 bioinformatics teams. Each laboratory has distinct service portfolio and matching instrumentation. Related bioinformatics services are provided by two bioinformatics teams or integrated in the core laboratory services. Following tables summarize available technologies and services.

 

FIMM Genomics

FUGU

BIDGEN

Nucleic acid QC

Labchip GX Touch
2100 Bioanalyzer
Victor NIVO
BluePippin
Qubit
NanoDrop

2100 Bioanalyzer
4200 TapeStation
Qubit

Victor Nivo

2100 Bioanalyzer
Fragment analyzer
BluePippin
Qubit
NanoDrop

NGS library
preparation

x

x x

Target enrichment /
hybridization capture

x x x

Metagenomics sequencing

  x x

De Novo
genome sequencing

    x

Whole Genome Sequencing
human and model organisms (WGS)

x x  

Whole Genome Sequencing
non-model organisms

  x x

Human exome sequencing
(WES)

x x  

Custom targeted sequencing / panels

x x x

Transcriptomics / full length RNA-seq

x x x

NGS Gene expression /
3' counting

x    

NGS smallRNA /
miRNA analysis

x x x

NGS targeted RNA panels

x    

NGS single-cell RNA-seq

FIMM SCA Unit x x

Linked-reads libraries
(10X Genomics Chromium)

x    

Tailored amplicon sequencing

x   x

T-cell receptor sequencing
(hsTCRB)

x    

NGS Mouse speed congenics

x    

Cell line identification
(fragment analysis)

x x  

Custom NGS assay development

x x x

 

FIMM Genomics

FUGU

BIDGEN

FIMM NGS Bioinfo

BI-BIOINFO

Resequencing / variant calling analysis

Included in NGS service

As a separate service   As a separate service  

Copy-number alteration discovery analysis

      As a separate service  

RNA-seq and miRNA-seq data-analysis

Included in NGS service

As a separate service   As a separate service As a separate service

Deep amplicon sequencing data analysis

Included in NGS service

As a separate service   As a separate service  

Differential expression data-analysis

  As a separate service   As a separate service  

Metagenome analysis

    As a separate service    

Genome assembly (de novo)

    As a separate service    

Genome annotation

        As a separate service

Assorted web servers

       

As a separate service