Services provided by HGI

HGI platform delivers services through 3 core laboratories and 2 bioinformatics teams. Each laboratory has distinct service portfolio and matching instrumentation. Related bioinformatics services are provided by two bioinformatics teams or integrated in the core laboratory services. Following tables summarize available technologies and services.
Sequencing technologies

 

FIMM Genomics

FUGU        

BIDGEN       

Illumina SBS short-reads

MiSeqNovaSeq6000

MiSeqFGx, NextSeq500

2MiSeq, NextSeq500, iSeq100

PacBio long read sequencing

   

PacBio Sequel II

Capillary sequencing / fragment analysis

ABI3730xl

 

ABI3130/ABI3500

NGS Services

 

FIMM Genomics

FUGU

BIDGEN

Nucleic acid QC

Labchip GX Touch

2100 Bioanalyzer

Victor NIVO

BluePippin

Qubit

NanoDrop

4200 TapeStation

2100 Bioanalyzer

Victor NIVO

Qubit

NanoDrop

2100 Bioanalyzer

Fragment analyzer

BluePippin

Qubit

NanoDrop

NGS library

preparation

x

x x

Target enrichment /

hybridization capture

x x x

Metagenomics sequencing

  x x

De Novo

genome sequencing

    x

Whole Genome Sequencing

human and model organisms (WGS)

x x  

Whole Genome Sequencing

non-model organisms

  x x

Human exome sequencing

(WES)

x x  

Custom targeted sequencing / panels

x x x

Transcriptomics / full length RNA-seq

x x x

NGS Gene expression /

3' counting

x x  

NGS smallRNA /

miRNA analysis

x x x

NGS targeted RNA panels

x    

NGS single-cell RNA-seq

FIMM SCA Unit x x

Tailored amplicon sequencing

x   x

T-cell receptor sequencing

(hsTCRB)

x    

NGS Mouse speed congenics

x    

Cell line identification

(fragment analysis)

x x  

Custom NGS assay development

x x x
Microarray based and targeted genomics services

 

FIMM Genomics

FUGU

BIDGEN         

Microarray scanners/readers

Illumina iScan & HiScan

Tecan automation

 

 

SNP genotyping microarrays (GWAS)

All Illumina arrays

   

Methylation analysis

Methylation EPIC

MassArray Epityper

   

Targeted SNP genotyping

MassARRAY

LightCycler 480 II

Fluidigm Biomark HD

 

Protein Biomarker Assays

 

NanoStringOlink

 

High-throughput qPCR

 

Fluidigm HD

 

Gene expression panels

  NanoString  

 

Bioinformatics services

 

FIMM Genomics

FUGU

BIDGEN

FIMM NGS Bioinfo

BI-BIOINFO

Resequencing / variant calling analysis

Included in NGS service

As a separate service   As a separate service  

Copy-number alteration discovery analysis

      As a separate service  

RNA-seq and miRNA-seq data-analysis

Included in NGS service

As a separate service   As a separate service As a separate service

Deep amplicon sequencing data analysis

Included in NGS service

As a separate service   As a separate service  

Differential expression data-analysis

  As a separate service   As a separate service  

Metagenome analysis

  As a separate service As a separate service    

Genome assembly (de novo)

    As a separate service    

Genome annotation

        As a separate service

Assorted web servers

       

As a separate service