FIMM IT

FIMM Technology Centre IT Services unit (FIMM IT) is an IT infrastructure using both local infrastructure by FIMM and national infrastructure by CSC to provide computing environment for FIMM Technology Centre units and FIMM research groups.

FIMM's computing infrastructure has been designed for scalability and flexibility using the latest information technologies. Computational services and resources currently available at FIMM include analysis clusters, short-term disk space for computing, local mirrors of public databases and database servers. FIMM IT does not provide any long-term data storage.

FIMM IT collaborates closely with UH IT Services and CSC to provide seamless transformation between computational environments.
Contact:
Services: Scientific Infrastructure

Sample logistics and data collection

  • In house developed tools for data harmonization, pseudonymization, anonymization and consent and sensitive data management

Data production and management

  • In house developed data management tools and databases (GLIMS, DHR/ GeneRISK data-ui)

Analysis pipelines and high performance computation

  • Development and maintenance of local and cloud computation tools and environments

Data movement and integration

  • Development of interfaces and integrations to in house developed databases and external systems
  • Core laboratory data delivery platform (with ELIXIR / CSC)
    • LSDCC, Arkku, Acamedic, Allas