Image: Romika Kumari : AML single cell analytics data
MON-TUE Oct 3rd-4th Single cell RNAseq workshop (DPBM-120)
3rd-4th October 9:00-11:00
Monday 3rd October, Biomedicum Helsinki, Seminar room 1-2
9.00 – 9.45 Pirkko Mattila (FIMM TC): Introduction to single cell omics
15 min break
10.00 – 10.45 Jenni Lahtela (FIMM TC): Overview of 10x Chromium system
Tuesday 4th October, Biomedicum Helsinki, Lecture hall 3
9.00 – 9.45: Pekka Ellonen (Illumina): Basics to NGS - Illumina platform (preliminary confirmation)
15 min break
10.00 – 10.30: Adam Jerauld (10XGenomics) : Overview of single cell RNAseq data analysis workflow (10X pipelines)
10.30 – 11.00: Matias Marin Falco and Anna Pirttikoski (Anna Vähärautio´s group): Approches for scRNA-seq data analysis in cancer research
3rd-4th October 12:00-16:00 at Biomedicum 2 (FIMM, P-floor Room GP13a)
Wet-lab workshop for 10x Chromium Single Cell 3' Gene Expression workflow.
WED Oct 5th Single Cell Transcriptomics Symposium (DPBM-161), Biomedicum Helsinki, Lecture hall 2
Speakers: Martin Enge (Karolinska Institutet), Laura Elo (Univ. of Turku), Naveed Ishaque (Charité – Universitätsmedizin Berlin), Kim Thrane (KTH Royal Institute of Technology), Andrew Erickson (UH), Biswajyoti Sahu (Univ. of Oslo & UH), Akira Takeda (Univ. of Turku), Eliisa Kekäläinen (UH) and Caroline Heckman (FIMM). The schedule and talk titles can be found here.
THU 6th Oct Single cell RNA-seq data analysis using R (CSC, Espoo, advanced course, knowledge of R required).
For more information and registration, follow this link: CSC/R
FRI 7th Oct Single cell RNA-seq data analysis using Chipster (CSC, Espoo, no R knowledge needed).
For more information and registration, follow this link: CSC/Chipster
Organizers and teachers: Doctoral Program in Biomedicine (DPBM), Pirkko Mattila, Jenni Lahtela, Anna Vähärautio, Eija Korpelainen, Maria Lehtivaara, Bishwa Ghimire, Caroline Heckman, Eliisa Kekäläinen, Laura Langhor