Single Cell Course Week 2025

Are you interested in learning how to produce or analyse single cell RNAseq data? Then the single cell course week in March 2025 is for you! During this course week you will learn how to prepare single cell RNAseq libraries with 10XGenomics Chromium, how to analyze the data (R/command line tools or Chipster/Seurat), and you have the possibility to enjoy state-of-the-art talks in the symposium.

Romika Kumari: AML single cell analytics data

Programme overview

Single cell RNAseq workshop (DPBM-120)

MON March 10th – TUE March 11th 2025 
 

Registration: 
Registration is open at https://elomake.helsinki.fi/lomakkeet/133170/lomakkeet.html


Lectures

10th-11th March 9:00-11:00
 

Monday 10th March, Biomedicum Helsinki, CP18 Skutsi

9.00 – 9.55 Short introduction to single cell omics

10.00 – 10.55 Single Cell Sequencing: Zooming in on 10x Genomics' Chromium Platform


Tuesday 11th March, Biomedicum Helsinki, CP18 Skutsi

9.00 – 9.45: Basics to NGS - Illumina platform

15 min break

10.00 – 10.30:  Overview of single cell RNAseq data analysis workflow (10X pipelines)

10.30 – 11.00: Approches for scRNA-seq data analysis in cancer research


Wet-lab workshop

10th-11th of March 12:00-16:00 at Biomedicum 2 (FIMM, 2nd-floor, F-wing)

Wet-lab workshop for 10x Chromium Single Cell 3' Gene Expression workflow.

 

Single Cell Omics Symposium (DPBM-161)

THU March 13th 2025, Biomedicum Helsinki, Lecture hall 1

Registration is open at https://elomake.helsinki.fi/lomakkeet/133078/lomakkeet.html

More information: Single Cell Omics Symposium webpage

 

Data analysis

THU March 6th – FRI March 7th 2025
Single cell RNA-seq data analysis using R (CSC, Espoo, advanced course, knowledge of R required)

More information about the course and registration https://csc.fi/en/training-calendar/single-cell-rna-seq-data-analysis-using-r-3/

 

TUE March 4th - WED March 5th 2025
Single cell RNA-seq data analysis using Chipster (CSC, Espoo, beginners course, as the web-based Chipster software is used, no knowledge of R required)

More information about the course and registration https://csc.fi/en/training-calendar/single-cell-rna-seq-data-analysis-using-chipster-2/
 

Organisers and teachers:

FIMM SIngle-Cell Analytics unit, researchers in the single cell omics field in Finland and CSC.