Research data

Acc. no.// Organism// Sequence description // Link to sequence

Acinetobacter phages

  • MH460829.1 // Acinetobacter phage fHy-Aci03 //  166 kb Myovirus whole genome // MH460829.1
  • MT344103 // Acinetobacter temperate phage fEg-Aba01 // 34 kb Siphovirus genome // MT344103
  • MT344104 // Acinetobacter temperate phage fLi-Aba02 // 34 kb Siphovirus genome // MT344104
  • MT344105 // Acinetobacter temperate phage fLi-Aba03 // 34 kb Siphovirus genome // MT344105

Escherichia phages

  • AJ318471 // Escherichia phage T3, strain Luria // 39 kb Podovirus whole genome // AJ318471
  • MG781190.1 // Escherichia phage fFi-Eco06 // 167 kb Myovirus whole genome // MG781190.1
  • MG781191.1 // Escherichia phage fHo-Eco02 // 167 kb Myovirus whole genome // MG781191.1
  • MT711523 // Escherichia phage vB_EcoS_fFiEco02 // 45 kb Siphovirus whole genome // MT711523
  • MT711524 // Escherichia phage vB_EcoS_fFiEco03 // 44 kb Siphovirus whole genome // MT711524
  • MT711525 // Escherichia phage vB_EcoS_fKuEco01 // 41 kb Siphovirus whole genome // MT711525
  • MT711526 // Escherichia phage vB_EcoS_fPoEco01 // 44 kb Siphovirus whole genome // MT711526
  • MT711527 // Escherichia phage vB_EcoS_fTaEco01 // 41 kb Siphovirus whole genome // MT711527
  • MT711528 // Escherichia phage vB_EcoS_fTaEco03 // 42 kb Siphovirus whole genome // MT711528

Klebsiella phages

  • MN163280 // Klebsiella phage KpGranit // 123 kb Myovirus whole genome // MN163280
  • MN380459 // Klebsiella phage vB_KpnP_fHeKpn01 // 43 kb Podovirus whole genome // MN380459 

Pseudomonas phages

  • MK318076.1 // Pseudomonas phage fHoPae01 // 66.4 kb Myovirus whole genome // MK318076.1
  • MN131141.1 // Pseudomonas phage PaP1_EPu-2019  (PA1P1) // 66.6 kb Myovirus whole genome //  MN131141.1
  • MN131142.1 // Pseudomonas phage PA8P1 // 65.7 kb Myovirus whole genome // MN131142.1
  • MN131143.1 // Pseudomonas phage PA11P1 // 66.0 kb Myovirus whole genome // MN131143.1

Staphylococcus phages

  • LR215718 // Staphylococcus phage Stab20 // 153 kb Myovirus whole genome // LR215718
  • LR215719 // Staphylococcus phage Stab21 // 154 kb Myovirus whole genome // LR215719
  • LR215720 // Staphylococcus phage Stab22  (Note, the name in the record is wrong, updating pendig) // 154 kb Myovirus whole genome // LR215720
  • LR215721 // Staphylococcus phage Stab23 (Note, the name in the record is wrong, updating pendig) // 156 kb Myovirus whole genome // LR215721
  • MF398190.1 // Staphylococcus phage fRu-Sau02 // 148 kb Myovirus whole genome // MF398190.1
  • MK348510.1 // Staphylococcus phage  fPfSau02 // 45 kb Siphovirus whole genome // MK348510.1

Yersinia phages

  • AJ251805 // Yersinia phage fYeO3-12 // 40 kb Podovirus complete genome // AJ251805
  • AJ972879// Yersinia phage fR1-37 // 262 kb Myovirus whole genome // AJ972879
  • AJ972880 // Yersinia phage fR1-37 // sp46 gene for structural protein sp46 precursor // AJ972880
  • LR215722 // Yersinia phage fPS-2 // 169 kb Myovirus whole genome // LR215722
  • LT961840 // Yersinia phage fPS-7 // 39 kb Podovirus whole genome // LT961840
  • LT960606 // Yersinia phage fPS-9 // 39 kb Podovirus whole genome // LT960606
  • LT962907 // Yersinia phage fPS-10 // 39 kb Podovirus whole genome // LT962907
  • LT962906 // Yersinia phage fPS-16 // 39 kb Podovirus whole genome // LT962906
  • LT961838 // Yersinia phage fPS-19 // 39 kb Podovirus whole genome // LT961838
  • LT961844 // Yersinia phage fPS-21 // 39 kb Podovirus whole genome // LT961844
  • LT961836 // Yersinia phage fPS-26 // 40 kb Podovirus whole genome // LT961836
  • LT961843 // Yersinia phage fPS-50 // 40 kb Podovirus whole genome // LT961843
  • LT961837 // Yersinia phage fPS-52 // 40 kb Podovirus whole genome // LT961837
  • LT962379 // Yersinia phage fPS-53 // 40 kb Podovirus whole genome // LT962379
  • LT962475 // Yersinia phage fPS-54-ocr // 40 kb Podovirus whole genome // LT962475
  • LT961845 // Yersinia phage fPS-59 // 39 kb Podovirus whole genome // LT961845
  • LT961846 // Yersinia phage fPS-64 // 39 kb Podovirus whole genome // LT961846
  • LR215724 // Yersinia phage fPS-65 // 167 kb Myovirus whole genome // LR215724
  • LT962380 // Yersinia phage fPS-85 // 40 kb Podovirus whole genome // LT962380
  • LT961842 // Yersinia phage fPS-86 // 39 kb Podovirus whole genome // LT961842
  • LT961841 // Yersinia phage fPS-89 // 40 kb Podovirus whole genome // LT961841
  • LR215723 // Yersinia phage fPS-90 // 167 kb Myovirus whole genome // LR215723
  • LT992259 // Yersinia phage fEV-1 // 38 kb Dwarf Myovirus whole genome  // LT992259
  • HE956707 // Yersinia phage fR8-01 // 40 kb Podovirus whole genome // HE956707
  • HE956710 // Yersinia phage f80-18 = fWA-1 // 42 kb Podovirus whole genome // HE956710
  • KY318515 // Yersinia phage fHe-Yen3-01 // 46 kb Podovirus whole genome // KY318515
  • Pending // Yersinia phage fHe-Yen8-01 // 93 kb whole genome // Pending
  • HE956708 // Yersinia phage fR2-01 // 122 kb Siphovirus whole genome // HE956708
  • HE956711 // Yersinia phage fD1 // 167 kb Myovirus whole genome // HE956711
  • KY593455 // Yersinia phage fHe-Yen9-01 // 168 kb Myovirus whole genome // KY593455
  • HE956709 // Yersinia phage fR1-RT // 169 kb Myovirus whole genome // HE956709
  • Pending // Yersinia phage fHe-Yen9-06 // 234 kb Myovirus whole genome // Pending
  • Pending // Yersinia phage fHe-Yen9-02 // 249 kb Myovirus whole genome // Pending
  • LT960552 // Yersinia phage fHe-Yen9-03 // 260 kb Myovirus whole genome // LT960552
  • LT960551 // Yersinia phage fHe-Yen9-04 // 355 kb Myovirus whole genome // LT960551
  • Pending // Yersinia phage YerA41 // 150? kb Myovirus partial genome // Pending

 

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Acinetobacter baumannii bioproject PRJNA625727

  • strains #5707 , #5907, #5920, #6597

Yersinia enterocolitica

  • Strains 6471/76, 6471/76-c

Yersinia pseudotuberculosis bioproject PRNJAxxxxxx

  • >100 strains

Klebsiella pneumoniae

  • strains xxxx,xxxxx,xxxxx

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Acc. no. // Organism // Sequence description // Link to sequence

  • AJ251712 // Yersinia pseudotuberculosis O:1b // O-antigen gene cluster // AJ251712
  • AJ251713 // Yersinia pestis EV76 // Cryptic O-antigen gene cluster // AJ251713
  • AJ605741 // Yersinia enterocolitica O:9 // O-antigen gene cluster // AJ605741
  • AJ871364 // Yersinia aldovae Å125// O-antigen gene cluster // AJ871364
  • U46859 // Yersinia enterocolitica O:8// O-antigen gene cluster // U46859
  • Z18920 // Yersinia enterocolitica O:3 // O-antigen gene cluster // Z18920
  • AM849474 // Yersinia pseudotuberculosis O:15 // O-antigen gene cluster // AM849474
  • Z47767 // Yersinia enterocolitica O:3// Outer core gene cluster // Z47767
  • AJ539154 // Yersinia pseudotuberculosis O:1c // Partial wzz gene for O-antigen chain length determinator // AJ539154
  • AJ539155 // Yersinia pseudotuberculosis O:2c // Partial wzz gene for O-antigen chain length determinator // AJ539155
  • AJ539156 // Yersinia pseudotuberculosis O:5b // Partial wzz gene for O-antigen chain length determinator // AJ539156
  • AM849470 // Yersinia pseudotuberculosis O:6 // Partial wzz gene for O-antigen chain length determinator // AM849470
  • AJ539157 // Yersinia pseudotuberculosis O:9 // Partial wzz gene for O-antigen chain length determinator // AJ539157
  • AM849471 // Yersinia pseudotuberculosis O:10 // Partial wzz gene for O-antigen chain length determinator // AM849471
  • AJ539158 // Yersinia pseudotuberculosis O:11 // Partial wzz gene for O-antigen chain length determinator // AJ539158
  • AJ539159 // Yersinia pseudotuberculosis O:12 // Partial wzz gene for O-antigen chain length determinator // AJ539159
  • AM849472 // Yersinia pseudotuberculosis O:13 // Partial wzz gene for O-antigen chain length determinator // AM849472
  • AM849473 // Yersinia pseudotuberculosis O:14 // Partial wzz gene for O-antigen chain length determinator // AM849473
  • AJ539147 // Yersinia pseudotuberculosis O:1a // Partial wzx gene for O-unit flippase // AJ539147
  • AJ539148 // Yersinia pseudotuberculosis O:1c // Partial wzx gene for O-unit flippase // AJ539148
  • AJ539149 // Yersinia pseudotuberculosis O:5a // Partial wzx gene for O-unit flippase // AJ539149
  • AJ539150 // Yersinia pseudotuberculosis O:11 // Partial wzx gene for O-unit flippase // AJ539150
  • AJ539151 // Yersinia pseudotuberculosis O:14 // Partial wzx gene for O-unit flippase // AJ539151
  • AJ539152 // Yersinia pseudotuberculosis O:15 // Partial wzx gene for O-unit flippase // AJ539152
  • AJ539153 // Yersinia pseudotuberculosis O:14 // partial wbyJ and wbyI genes (putative mannosyl- and paratoryltransferases // AJ539153

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Acc. no. // Organism // Sequence description // Link to sequence

  • M32097 // Yersinia enterocolitica O:3 // lcrE gene // M32097
  • X13880 // Yersinia pestis 019// yadA pseudogene // X13880
  • X13881 // Yersinia enterocolitica O:8 // yadA gene // X13881
  • X13882 // Yersinia enterocolitica O:3 // yadA gene // X13882
  • X13883 // Yersinia pseudotuberculosis O:3 // yadA gene // X13883
  • X51833 // Yersinia pseudotuberculosis O:3 // lcrE gene // X51833
  • 1P9H // Yersinia enterocolitica O:3 // YadA collagen binding domain 3D structure // 1P9H
  • AJ605740 // Yersinia enterocolitica O:3 // ail gene plus flanking regions // AJ605740

Other Yersinia genes

Acc. no. // Organism // Sequence description // Link to sequence

  • Z18865 // Yersinia enterocolitica O:3 // yeuA, yeuB, and yeuC genes of urease operon // Z18865
  • AJ626755 // Yersinia enterocolitica O:3 // deaD - amo region // AJ626755

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Acc. no. // Organism // Sequence description // Link to sequence

  • AJ871363 // Yersinia aldovae Å125 // 16S rRNA gene // AJ871363
  • AY028622 // Acinetobacter sp. S2 // 16S rRNA gene, partial sequence // AY028622
  • AY028621 // Planococcus sp. S5 // 16S rRNA gene, partial sequence // AY028621
  • M35798 // Yersinia pestis // 23S rRNA gene, partial sequence // M35798
  • M35799 // Yersinia pseudotuberculosis // 23S rRNA gene, partial sequence // M35799
  • M35800 // Yersinia enterocolitica O:6,31 // 23S rRNA gene, partial sequence // M35800
  • M35801 // Yersinia enterocolitica O:8 // 23S rRNA gene, partial sequence // M35801
  • M35802 // Yersinia bercovieri // 23S rRNA gene, partial sequence // M35802
  • M35803 // Salmonella typhimurium (ATCC 13311) // 23S rRNA gene, partial sequence // M35803
  • M35804 // Unidentified eubacterium // 23S rRNA gene, partial sequence // M35804
  • M35805 // Yersinia enterocolitica 0:1 // 23S rRNA gene, partial sequence // M35805
  • M35806 // Yersinia enterocolitica 0:2 // 23S rRNA gene, partial sequence // M35806
  • M35807 // Yersinia enterocolitica 0:3 // 23S rRNA gene, partial sequence // M35807
  • M35808 // Yersinia enterocolitica 0:5,27 // 23S rRNA gene, partial sequence // M35808
  • M35809 // Yersinia enterocolitica 0:9 // 23S rRNA gene, partial sequence // M35809
  • M35810 // Yersinia enterocolitica 0:15 // 23S rRNA gene, partial sequence // M35810
  • M35811 // Yersinia enterocolitica 0:4,32 // 23S rRNA gene, partial sequence // M35811
  • M35812 // Yersinia enterocolitica 0:8 // 23S rRNA gene, partial sequence // M35812
  • M35813 // Yersinia enterocolitica 0:13a,13b // 23S rRNA gene, partial sequence // M35813
  • M35814 // Yersinia enterocolitica 0:13,18 // 23S rRNA gene, partial sequence // M35814
  • M35815 // Yersinia enterocolitica 0:20 // 23S rRNA gene, partial sequence // M35815
  • M35816 // Yersinia enterocolitica 0:21 // 23S rRNA gene, partial sequence // M35816
  • M35817 // Yersinia enterocolitica 0:34 // 23S rRNA gene, partial sequence // M35817
  • M35818 // Yersinia bercovieri 0:58,16 // 23S rRNA gene, partial sequence // M35818
  • M35819 // Salmonella typhimurium (ATCC 13311) // 23S rRNA gene, partial sequence // M35819
  • U28268 // Bartonella quintana // 16S rRNA gene // U28268

Yersinia ribosomal protein genes

Acc. no.// Organism// Sequence description // Link to sequence

  • U11251 // Yersinia enterocoliticaO:3 // rplW, rplB and rpsS (partial) genes // U11251
  • U11252 // Yersinia enterocoliticaO:8 // rplW gene // U11252

Genes of other bacteria

Acc. no.// Organism// Sequence description // Link to sequence

  • Z21672 // Escherichia coli // dhfrXII gene encoding dihydrofolate reductase // Z21672
  • AF002716 // Streptococcus pyogenes // lpg1 and lpg2 and ermTR genes // AF002716

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Bacterial transcriptomes

Bacteriophage transcriptomes

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Bacterial proteomics

Bacteriophage proteomics

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