Publications

Budinger D*, Puigdevall P*, Hall GT*, Roth C, Xenakis T, Marrosu E, Jerber J, Di Domenico A, Kilpinen H, Castellano S, Barral S, Kurian MA. bioRxiv 2024

Sundaresh A*, Meistermann D*, Lampela R, Yang Z, Woldegebriel R, Ganna A, Puigdevall P, Kilpinen H. bioRxiv 2023

Gynter A, Meistermann D, Lähdesmäki H, Kilpinen H. . bioRxiv 2023

Puigdevall P, Jerber J, Danecek P, Castellano S, Kilpinen H. Cell Genomics 2023 Mar 23;3(4): 100280.

Saukkonen A, Kilpinen H*, Hodgkinson A*. Genome Res. 2022 Jul 6;32(8):1565-72.

Bonder MJ, Smail C, Gloudemans MJ, Frésard L, Jakubosky D, D’Antonio M, Li X, Ferraro NM, Carcamo-Orive I, Mirauta B, Seaton DD, Cai N, Vakili D, Horta D, Zhao C, Zastrow DB, Bonner DE; HipSci Consortium; iPSCORE consortium; Undiagnosed Diseases Network; PhLiPS consortium, Wheeler MT, Kilpinen H, Knowles JW, Smith EN, Frazer KA, Montgomery SB, Stegle O. Nat Genet. 2021 Mar;53(3):313-321.

Mirauta B, Seaton DD, Bensaddek D, Brenes A, Bonder MJ, Kilpinen H, HipSci consortium, Stegle O, Lamond A. eLife 2020 Aug 10;9:e57390.

Schwartzentruber J, Foskolou S, Kilpinen H, Rodrigues J, Alasoo K, Knights AJ, Patel M, Goncalves A, Ferreira R, Benn CL, Wilbrey A, Bictash M, Impey E, Cao L, Lainez S, Loucif AJ, Whiting PJ, HIPSCI Consortium, Gutteridge A, Gaffney DJ. Nat Genet. 2018 Jan;50(1):54-61.

Kilpinen H*, Goncalves A*, Leha A, Afzal V, Ashford S, Bala S, Bensaddek D, Casale FP, Culley O, Danecek P, Faulconbridge A, Harrison P, McCarthy D, McCarthy SA, Meleckyte R, Memari Y, Moens N, Soares F, Streeter I, Chukwuma AA, Alderton A, Nelson R, Harper S, Patel M, Clarke L, Halai R, Kirton CM, Kolb-Kokocinski A, Beales P, Birney E, Danovi D, Lamond AI, Ouwehand WH, Vallier L, Watt FM, Durbin R, Stegle O, Gaffney DJ. Nature 2017 Jun 15;546(7658):370-375.

Waszak SM*, Delaneau O*, Gschwind AR, Kilpinen H, Raghav SK, Witwicki RM, Orioli A, Wiederkehr M, Panousis NI, Yurovsky A, Romano-Palumbo L, Planchon A, Bielser D, Padioleau I, Udin G, Thurnheer S, Hacker D, Hernandez N, Reymond A, Deplancke B, Dermitzakis ET. Cell. 2015 Aug 27;162(5):1039-50.

Waszak SM, Kilpinen H, Gschwind AR, Orioli A, Raghav SK, Witwicki RM, Migliavacca E, Yurovsky A, Lappalainen T, Hernandez N, Reymond A, Dermitzakis ET, Deplancke B. Bioinformatics. 2014 Jan 15;30(2):165-71.

Kilpinen H*, Waszak SM*, Gschwind AR*, Raghav SK, Witwicki RM, Orioli A, Migliavacca E, Wiederkehr M, Gutierrez-Arcelus M, Panousis NI, Yurovsky A, Lappalainen T, Romano-Palumbo L, Planchon A, Bielser D, Bryois J, Padioleau I, Udin G, Thurnheer S, Hacker D, Core LJ, Lis JT, Hernandez N, Reymond A, Deplancke B, Dermitzakis ET. Science. 2013 Nov 8;342(6159):744-7.