Publications

Ahola V.

, Lehtonen R., Somervuo P. et al. 2014. The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera. Nature Communications 5, 4737.

  • Koskinen J. P., Holm L. 2012. Sans: High-throughput retrieval of protein sequences allowing 50% mismatches. Bioinformatics 28, I438.
    • Radivojac P., et al. 2013. A large-scale evaluation of computational protein function prediction. Nat. Methods 10, 221.
    • Rastas P., Paulin L., Hanski I., Lehtonen R., Auvinen P. 2013. Lep-map: Fast and accurate linkage map construction for large snp datasets. Bioinformatics 29, 3128.
    • Salmela L. 2010. Correction of sequencing errors in a mixed set of reads. Bioinformatics 26, 1284.
    • Salmela L., Mäkinen V., Välimäki N., Ylinen J. and Ukkonen E. 2011. Fast scaffolding with small independent mixed integer programs. Bioinformatics 27, 3259.
    • Salmela L. and Schröder J. 2011. Correcting errors in short reads by multiple alignments. Bioinformatics 27, 1455.
    • Ta H. X., Koskinen P., Holm L. 2011. A novel method for assigning functional linkages to proteins using enhanced phylogenetic trees. Bioinformatics 27, 700.