Single cell course week program

In this course week you will learn how to prepare single cell RNAseq libraries with platforms currently existing in Helsinki (10x Genomics Chromium, Drop-seq, SeqWell, Milo), how to analyze the data (R/command line tools or Chipster/Seurat), and enjoy the state of the art talks in the symposium.

MONDAY 17.9.2018 Single cell RNAseq workshop (DPBM-120)

Lectures 9:00-11:00 (Biomedicum Helsinki, meeting room 3), open for all

  • Pirkko Mattila: Introduction to single cell omics
  • Päivi Saavalainen: Overview of Drop-seq, SeqWell and Milo systems
  • Jenni Lahtela: Overview of 10x Chromium system

Wet-lab workshops 12.00-16.00 at FIMM & Haartman-institute B116, only for selected registered students

TUESDAY 18.9.2018 Single cell RNAseq workshop (continues)

Lectures 9.00-11.00  Biomedicum, Lecture Hall 3, open for all

  • Pekka Ellonen: Basics to NGS - Illumina platform
  • Bishwa Ghimire: Overview of single cell RNAseq data analysis workflow

Wet-lab workshops 12.00-16.00 at FIMM & Haartman-institute B116, only for selected registered students

WEDNESDAY 19.9.2018 Single cell RNA-seq data analysis using Chipster (at CSC, Espoo)

https://www.csc.fi/fi/web/training/-/single-cell-rnaseq-2018

THURSDAY 20.9.2018 Single Cell Transcriptomics Symposium, Biomedicum, lecture hall 1. See the program here.
 

FRIDAY 21.9. Single cell RNA-seq data analysis using R and command line tools (at CSC, Espoo)

https://www.csc.fi/fi/web/training/-/single-cell-rnaseq-r-2018