Haartmaninkatu 8 (PO Box 63)
00014 University of Helsinki
Phone: +358 2941 25555
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My research focuses on DNA damage repair, especially homologous recombination (HR) repair, in high-grade serous ovarian cancer (HGSOC). In our lab, we have established an immunofluorescence-based assay to detect HR deficiency in HGSOC tumor cells. By utilizing this assay, my aim is to find a way to (re-)sensitize cancer cells to chemotherapy by manipulating HR repair pathway.
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LINE-1 are transposable elements that comprise approximately 17% of human DNA. Even though silent in normal cells, LINE-1s are transcriptionally active in different types of cancer, often resulting in de novo insertions and therefore conducting to genomic instability. I am interested to understand the genomic evolution of LINE-1 activity in high-grade serous ovarian cancer.
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There is recent, mounting evidence that bacteria and viruses play a previously unappreciated role in cancer development and response to therapy. Microbiota encompasses a wide variety of microorganisms (bacteria, viruses, fungi) and has gathered increasing attention regarding their role in carcinogenesis. Our objective is to provide a new perspective into the molecular behavior of high-grade serous ovarian carcinoma (HGSOC), by studying the presence and role of bacteria and viruses in causing DNA damage, and to present novel target treatments aimed towards bacteria and viruses to improve the clinical outcome of this disease.
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Project: Targeting CCNE1 Amplification in HGSOC
Centered on high-grade serous ovarian cancer (HGSOC), my research is rooted in the pivotal role of DNA damage and its targeted treatments. My research aims to tackle CCNE1 amplification in HGSOC, a genetic alteration present in at least 20% of the HGSOC patients. My dedication centers on understanding the molecular intricacies underlying CCNE1 amplification and its impact on HGSOC progression. Given that existing therapies are efficient solely in HR-deficient tumors, I aim to delve into synthetic lethality approaches specifically tailored for HR-proficient tumor cells harboring CCNE1 amplification.
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The goal of my project is to understand the temporal location of the DNA damage (% in S phase), the differences in the tumour microenvironment (TME) between HR-deficient and HR-proficient tumours and propose avenues for alternative treatment strategies.
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My research focuses on advancing the functional homologous recombination (fHR) assay developed in our lab, which holds significant potential for identifying HR-deficient (HRD) cases responsive to PARP inhibitors and chemotherapy. My expertise lies in the fHR testing method, with my current goal being its adaptation to de novo metastatic prostate cancer—a setting where PARPi has shown great promise in recent years.
Additionally, I aim to integrate genomic data to enhance the identification of HRD cases and evaluate the fHR assay’s performance by comparing it against real-world clinical outcomes. This work seeks to bridge functional testing and genomics to refine precision oncology approaches for HRD-driven cancers.
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Phone: 0504489442
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Post-doctoral researcher
Maarit Hakkarainen, lab technician
Miia Kaistamaa, MD
Taina Turunen, lab technician
Minna Tuominen, lab manager
Kul Shrestha, PhD
Manuela Tumiati, PhD
Nanna Sarvilinna, PhD
Imrul Faisal, PhD
Linlin Zhang, MD, PhD
Susanna Jonkka, MSc
Denis Dermadi Bebek, PhD
Juha Matilainen, PhD
Henrik Talsi, summer student
Vanessa Keser, ERASMUS student
Venkatram Yellapragada, MSc
Saundarya Shah, lab manager
Martyna Salciute, BSc
Elli Aska, PhD
Oona Mehtälä, summer student
Jasmin Grönman, MSc
Barun Pradhan, post-doc
Minerva Kulomaa, MSc
Lilla Györffy, transmed student
Filippa Tallqvist, MSc