Publications

2018

Precise prediction of antibiotic resistance in Escherichia coli from full genome sequences
D Moradigaravand, M Palm, A Farewell, V Mustonen, J Warringer, L Parts
PLoS Comput Biol 14(12): e1006258. https://doi.org/10.1371/journal.pcbi.1006258

The evolutionary landscape of colorectal tumorigenesis
W Cross, M Kovac, V Mustonen, D Temko, H Davis, AM Baker, S Biswas, ..., T Graham, I Tomlinson
Nature ecology & evolution 2 (10), 1661

Uncovering natural longevity alleles from intercrossed pools of aging fission yeast cells
DA Ellis, V Mustonen, M Rodríguez-López, C Rallis, M Malecki, D  Jeffares D , J Bahler
Genetics 210 (2), 733-744

Evaluating genetic drift in time-series evolutionary analysis
NR Nené, V Mustonen, CJR Illingworth
Journal of theoretical biology 437, 51-57

2017

Clonal heterogeneity influences the fate of new adaptive mutations
I Vázquez-García, F Salinas, J Li, A Fischer, B Barré, J Hallin, A Bergström, E Alonso-Perez, J Warringer, V Mustonen, G Liti
Cell reports 21 (3), 732-744

Rapid identification of genes controlling virulence and immunity in malaria parasites
HM Abkallo, A Martinelli, M Inoue, A Ramaprasad, P Xangsayarath,  J Gitaka, J Tang, K Yahata, A Zoungrana, H Mitaka, A Acharjee, PP Datta, P Hunt, R Carter, O Kaneko, V Mustonen, CJR Illingworth, A Pain, R Culleton
PLoS pathogens 13 (7), e1006447

Predicting evolution
M Lässig, V Mustonen, AM Walczak
Nature ecology & evolution 1 (3), 0077

2016

Landscape of somatic mutations in 560 breast cancer whole-genome sequences
S Nik-Zainal, H Davies, J Staaf, M Ramakrishna, D Glodzik, X Zou, ... MR Stratton
Nature 534 (7605), 47

Development and validation of a comprehensive genomic diagnostic tool for myeloid malignancies
T McKerrell, T Moreno, H Ponstingl, N Bolli, JML Dias, G Tischler, V Colonna, B Manasse, A Bench, D Bloxham, B Herman, D Fletcher, N Park, MA Quail, N Manes, C Hodkinson, J Baxter, J Sierra, T Foukaneli, AJ Warren, J Chi, P Costeas, R Rad, B Huntly, C Grove, Z Ning, C Tyler-Smith, I Varela, M Scott, J Nomdedeu, V Mustonen, GS Vassiliou
Blood, blood-2015-11-683334

Adenoma development in familial adenomatous polyposis and MUTYH‐associated polyposis: somatic landscape and driver genes
M Rashid, A Fischer, CH Wilson, J Tiffen, AG Rust, P Stevens, S Idziaszczyk, J Maynard, GT Williams, V Mustonen, JR Sampson, DJ Adams.
The Journal of pathology 238 (1), 98-108

2015

Pathway and network analysis of cancer genomes
P Creixell, J Reimand, S Haider, G Wu, T Shibata, M Vazquez, V Mustonen, A Gonzalez-Perez, J Pearson, C Sander, BJ Raphael, DS Marks, BFF Ouellette, A Valencia, GD Bader, PC Boutros, JM Stuart, R Linding, N Lopez-Bigas, LD Stein
Nature methods 12 (7), 615

The value of monitoring to control evolving populations
A Fischer, I Vázquez-García, V Mustonen
Proceedings of the National Academy of Sciences 112 (4), 1007-1012