Algorithmic / Bioinformatics Journal Club

We organize a weekly journal club, where we discuss interesting papers from the fields of algorithms and bioinformatics.

These events are internal to the Algorithmic Bioinformatics group and its close collaborators.

Upcoming presentations

Date and presenter: Friday 18 March 2022, 11am-12pm, Andrea Cracco,
Paper: Khan, J., Kokot, M., Deorowicz, S., & Patro, R.
Date and presenter: Friday 25 March 2022, 11am-12pm, Shahbaz Khan,
Paper: Khan, J., Kokot, M., Deorowicz, S., & Patro, R.

2022:

Date and presenter: Friday 11 March 2022, 11am-12pm, Ariel, (Part II)
Paper: . Chirag Jain, Daniel Gibney and Sharma V. Thankachan.
Date and presenter: Friday 04 March 2022, 11am-12pm, Ariel (Part I)
Paper: . Chirag Jain, Daniel Gibney and Sharma V. Thankachan.
Date and presenter: Friday 25 February 2022, 11am-12pm, Nicola Rizzo.
Paper: . Belazzougui, D., Kosolobov, D., Puglisi, S. J., & Raman, R.
Date and presenter: Friday 18 February 2022, 11am-12pm, Andreas Grigorjew
Paper: . Vorapong Suppakitpaisarn
Date and presenter: Friday 11 February 2022, 11am-12pm, Diego Diaz
Paper: Bille, P., Landau, G. M., Raman, R., Sadakane, K., Satti, S. R., & Weimann, O.
Date and presenter: Friday 4 February 2022, 11am-12pm, Sebastian Schmidt
Paper: . Blazewicz, J., Kasprzak, M., Leroy-Beaulieu, B., & de Werra, D. (2008).
Date and presenter: Friday 28 January 2022, 11am-12 pm, Fernando Dias,
Paper: . Sashittal, Palash, Simone Zaccaria, and Mohammed El-Kebir.

2021:

Date and presenter: Friday 10 December 2021, 11am-12pm, Lucy Williams,
Paper: , Kyle Kloster, Philipp Kuinke, Michael P. O'Brien, Felix Reidl, Fernando Sánchez Villaamil, Blair D. Sullivan, Andrew van der Poel.
Date and presenter: Friday 03 December 2021, 11am-12pm, Borja Freire Castro
Paper:. Fritz, A., Bremges, A., Deng, Z. L., Lesker, T. R., Goetting, J., Ganzenmueller, T., ... & McHardy, A. C. (2021)
Date and presenter: Friday 19 November 2021, 11am-12pm, Andreas Grigorjew
Paper:. Journal of Computational Biology, Dalit Naor, Douglas L. Brutlag.
Date and presenter: Friday 19 November 2021, 11am-12pm, Sebastian Schmidt
Paper:, Xin Yin, Zhao Song, Karin Dorman, Aditya Ramamoorthy.
Date and presenter: Friday 12 November 2021, 11am-12pm, Fernando Dias
Paper: LeonardoTaccari.
Date and presenter: Wednesday 13 October 2021, 11am-12pm, Diego Diaz,
Paper: , Anders Roy Christiansen, Mikko Berggren Ettienne, Tomasz Kociumaka, Gonzalo Navarro, Nicola Prezza.
Date and presenter: Wednesday 6 October 2021, 11am-12pm, Nicola Rizzo,
Paper: , Henrik Björklunda, Wim Martens.
Date and presenter: Wednesday 22 September 2021, 11am-12pm, Lucy Williams,
Paper: , Kyle Kloster, Philipp Kuinke, Michael P. O'Brien, Felix Reidl, Fernando Sánchez Villaamil, Blair D. Sullivan, Andrew van der Poel.
Date and presenter: Wednesday 15 September 2021, 11am-12pm, Manuel Ariel Cáceres Reyes,
Paper: (continued), Marcelo Garlet Millani, Hendrik Molter, Rolf Niedermeier, Manuel Sorge
Date and presenter: Wednesday 8 September 2021, 11am-12pm, Manuel Ariel Cáceres Reyes,
Paper: , Marcelo Garlet Millani, Hendrik Molter, Rolf Niedermeier, Manuel Sorge
Date and presenter: Friday 3 September 2021, 11am-12pm, Shahbaz Khan,
Paper: , Benedict Paten, Adam M. Novak, Erik Garrison, Glenn Hickey
Date and presenter: Friday 27 August 2021, 11am-12pm, Tuukka Norri,
Paper: , Massimo Equi, Tuukka Norri, Jarno Alanko, Bastien Cazaux, Alexandru I. Tomescu, and Veli Mäkinen
Date and presenter: Friday 6 August 2021, 11am-12pm, Miika Leinonen,
Paper: , Christopher Lee, Catherine Grasso, Mark F. Sharlow.
Date and presenter: Friday 9 July 2021, 11am-12pm, Sebastian Schmidt,
Paper: , Joeri Sleegers, Daan van den Berg
Date and presenter: Friday 11 June 2021, 11am-12pm, Fernando Dias,
Paper: Hartman, T., Hassidim, A., Kaplan, H., Raz, D., & Segalov, M.
Date and presenter: Friday 4 June 2021, 11am-12pm, Andreas Grigorjew,
Paper: , K.-M. Chao, R. C. Hardison, and W. Miller.
Date and presenter: Friday 28 May 2021, 11am-12pm, Massimo Equi,
Topic:
Date and presenter: Friday 21 May 2021, 11am-12pm, Tuukka Norri,
Topic: .
Date and presenter: Friday 7 May 2021, 11am-12pm, Saska Dönges,
Paper: Patrick Dinklage, Johannes Fischer and Alexander Herlez.
Date and presenter: Friday 16 April 2021, 11am-12pm, Group Discussion,
Problem: Brain storming session on some open problems (continued)
Date and presenter: Friday 9 April 2021, 11am-12pm, Group Discussion.
Problem: Brain storming session on some open problems
Date and presenter: Friday 30 March 2021, 11am-12pm, Sebastian Schmidt,
Paper: Mikhail Kolmogorov, Jeffrey Yuan, Yu Lin and Pavel A. Pevzner.
Date and presenter: Friday 23 March 2021, 11am-12pm, Alexandru Tomescu,
Paper: , Karel Břinda, Michael Baym and Gregory Kucherov
Date and presenter: Thursday 26 March 2021, 2pm-3pm, Manuel Ariel Cáceres Reyes,
Paper: (continued) Xian Chang, Jordan Eizenga, Adam M Novak, Jouni Sirén, Benedict Paten,
Date and presenter: Thursday 18 March 2021, 2pm-3pm, Manuel Ariel Cáceres Reyes,
Paper: Xian Chang, Jordan Eizenga, Adam M Novak, Jouni Sirén, Benedict Paten,
Date and presenter: Thursday 11 March 2021, 2pm-3pm, Shahbaz Khan,
Paper: , Bastien Cazaux, Rodrigo Canovas and Eric Rivals.
Date and presenter: Thursday 4 March 2021, 2pm-3pm, Sebastian Schmidt,
Paper: , by Heng Li
Date and presenter: Thursday 18 February 2021, 2pm-3pm, Nicola Rizzo,
Paper: The Longest Repeated String Problem on Graphs, by Nicola Rizzo, Alexandru I. Tomescu, Massimo Equi, Veli Mäkinen and Alberto Policriti.
Date and presenter: Thursday 4 February 2021, 2pm-3pm, Shahbaz Khan,
Paper: , by Manoj Gupta and Shahbaz Khan
Date and presenter: Friday 29 January 2021, 12pm-1pm, Alexandru I. Tomescu,
Paper: , by Amir Abboud, Artūrs Bačkurs, Thomas Dueholm Hansen, Virginia Vassilevska Williams, Or Zamir
Date and presenter: Friday 22 January 2021, 11am-12pm, Massimo Equi,
Paper: , SOFSEM 2021, by Massimo Equi, Veli Mäkinen, Alexandru I. Tomescu
Date and presenter: Friday 15 January 2021, 11am-12pm, Sebastian Schmidt,
Paper: , by Anton Bankevich, Sergey Nurk, Dmitry Antipov, Alexey A. Gurevich, Mikhail Dvorkin, Alexander S. Kulikov, Valery M. Lesin, Sergey I. Nikolenko, Son Pham, Andrey D. Prjibelski, Alexey V. Pyshkin, Alexander V. Sirotkin, Nikolay Vyahhi, Glenn Tesler, Max A. Alekseyev, and Pavel A. Pevzner
Date and presenter: Friday 8 January 2021, 11am-12pm, Manuel Ariel Cáceres Reyes,
Paper: (continued) Journal of Computational Biology, by Chirag Jain, Haowen Zhang, Yu Gao, Srinivas Aluru.

2020:

Date and presenter: Friday 11 December 2020, 11am-12pm, Manuel Ariel Cáceres Reyes,
Paper: Journal of Computational Biology, by Chirag Jain, Haowen Zhang, Yu Gao, Srinivas Aluru.
Date and presenter: Friday 27 November 2020, 11am-12pm, Alexandru Tomescu and Sebastian Schmidt,
Paper: , Nature Methods () by Jue Ruan and Heng Li.
Date and presenter: Friday 20 November 2020, 11am-12pm, Shahbaz Khan,
Paper: , by Sung Gwan Park, Bastien Cazaux, Kunsoo Park, Eric Rivals
Date and presenter: Friday 13 November 2020, 11am-12pm, Manuel Ariel Cáceres Reyes,
Paper: by Daniel Gibney and Sharma V. Thankachan.
Date and presenter: Friday 6 November 2020, 11am-12pm, Sebastian Schmidt,
Paper: by Alireza Farhadi, MohammadTaghi Hajiaghayi, Kasper Green Larsen, Elaine Shi.
Date and presenter: Friday 23 October 2020, 11am-12pm, Jarno N. Alanko,
Paper: , by Guillaume Holley, Páll Melsted.
Date and presenter: Friday 16 October 2020, 11am-12pm, Shahbaz Khan
Paper: (conitnued), by Fabian Gärtner, Peter F. Stadler.
Date and presenter: Friday 9 October 2020, 11am-12pm, Shahbaz Khan
Paper: (first half), by Fabian Gärtner, Peter F. Stadler.
Date and presenter: Friday 2 October 2020, 11am-12pm, Alexandru Tomescu
Paper: , by Jasmijn A. Baaijens, Leen Stougie, Alexander Schönhuth.
Date and presenter: Friday 25 September 2020, 11am-12pm, Massimo Equi
Paper: , by Daniel Gibney, Gary Hoppenworth, Sharma V. Thankachan.
Date and presenter: Friday 18 September 2020, 11am-12pm, Jun Ma
Paper: , by Haoyu Cheng, Gregory T Concepcion, Xiaowen Feng, Haowen Zhang, Heng Li.
Date and presenter: Wednesday 9 September 2020, 2-3pm, Sebastian Schmidt
Paper: , by Pavel A. Pevzner, Haixu Tang, and Michael S. Waterman
Date and presenter: Wednesday 2 September 2020, 2-3pm, Manuel Ariel Cáceres Reyes
Paper: (Genome Research), by Ting Yu, Zengchao Mu, Zhaoyuan Fang, Xiaoping Liu, Xin Gao, and Juntao Liu.
Date and presenter: Wednesday 26 August 2020, 2-3pm, Alexandru Tomescu
Paper: (RECOMB 2020), by Pesho Ivanov, Benjamin Bichsel, Harun Mustafa, André Kahles, Gunnar Rätsch, Martin T. Vechev
Date and presenter: Wednesday 12 August 2020, 2-3pm, Shahbaz Khan
Paper: (TCS 2016), by Ljiljana Brankovica, Costas S. Iliopoulos, Ritu Kundu, Manal Mohamed, Solon P. Pissis, Fatima Vayani