Single-cell Analytics, FIMM

FIMM Single Cell Analytics (SCA) unit develops and provides single cell transcriptomics services nationally and internationally. SCA is closely collaborating with the Sequencing Unit at FIMM.

Contact person:  

10x team


Biomedicum Helsinki 2, Tukholmankatu 8, Meilahti campus, Helsinki


  • Single cell gene expression
  • Single cell full-length paired V(D)J transcript profiling
  • Single cell transcriptomic analysis
  • Bioinformatic secondary analysis of the single cell expression data


  • Chromium Controller (10x Genomics)
  • LUNA-FL™ Dual Fluorescence Cell Counter (Logos Biosystems)
  • Access to FIMM High Throughput Biomedicine Unit (HTB) Labcyte Echo 525 -acoustic dispenser
  • 2100 Bioanalyzer Instruments (Agilent Genomics)
  • LightCycler ® 480 Instrument II (Roche)

User fees:

The research infrastructure is supported by University of Helsinki (HiLIFE) and Biocenter Finland. The single cell gene expression and transcriptomics prices are composed of sample library preparation and sequencing. Below a case example of Chromium Single Cell 3’ analysis for University of Helsinki customers (VAT 0%). Please contact us to get information about up to date prices.

  • Chromium Single Cell 3’ Library prep 1604 €/sample (500-10 000 cells)
  • Sequencing is done in FIMM Sequencing Unit and the current price for 1000 cells with 50 000 reads per cell is approximately 516 €