After Parada, D'Elía & Palma, 2015, with fossil genera from McKenna & Bell, 1997, and Recent species from Nowak, 1991

<==o Sigmodontinae Wagner, 1843 [taxonomic history] (New World rats & mice)
   |--+-- Sigmodontini Wagner, 1843 [taxonomic history](puuvillarotat)
   |  `-- Ichthyomyini Vorontzov, 1959 [taxonomic history]  
   `--+--+-- Phyllotini Vorontsov, 1959 [taxonomic history]
      |  `--+-- Thomasomyini Steadman & Ray, 1982
      |     `--+== Akodontini Vorontzov, 1959
      |        `-- Scapteromyini Massoia, 1979 [taxonomic history]
      `--+--+--+-- Andinomys edax Thomas, 1902; Pleist.-R. SA. (andienhiiri) [Phyllotini?]
         |  |  `-- Punomys lemminus Osgood, 1943; R. SA. (punanhiiri) [Phyllotini?]
         |  `--+--o Juliomys González, 2000
         |     |  |-- †J. anoblepas (Winge, 1887) [Calomys anoblepas Winge, 1887; Oryzomys anoblepas Trouessart, 1898; Juliomys anoblepas Pardiñas & Teta, 2011]
         |     |  |-- J. ossitenuis
         |     |  |-- J. pictipes Osgood, 1933 [Thomasomys pictipes; Wilfredomys pictipes] (Lesser Wilfred's mouse)
         |     |  `-- J. rimofrons Oliveira & Bonvicino, 2002 (Cleft-headed juliomys)
         |     `--o Neomicroxus Alvarado-Serrano & D'Elia, 2013 [Akodon in partim] R. SAm.
         |        |-- N. bogotensis (Thomas, 1895) [Akodon bogotensis (Thomas, 1895)] (Bogotá grass mouse; Bogotá akodont)
         |        `-- N. latebricola (Anthony, 1924) [Microxus latebricola; Akodon latebricola (Anthony, 1924)]





   |?-o Andalgalomys
   |  |-- A. olrogi
   |  `-- A. pearsoni
   |?-o Baiomys True, 1894; L.Plioc.-R. NAm., R. CAm.
   |  |?- †B. aquilonius Zakrzewski, 1969
   |  |?- †B. brachygnathus
   |  |?- †B. minimus
   |  |?- †B. mowi
   |  |?- †B. rexroadi Hibbard, 1941
   |  |?-+-- †B. sawrockensis (Hibbard, 1952)
   |  |  `-- †B. kolbi (Hibbard, 1952)
   |  |-- B. musculus (etelänkääpiöhiiri)
   |  `-- B. taylori (pohjankääpiöhiiri)
   |?-o †Cordimys Zijlstra, McFarlane, Van Den Hoek Ostende & Lundberg, 2014; Pleist.-Holoc. Ant.
   |  |-- †C. debuisonjei Zijlstra, McFarlane, Van Den Hoek Ostende & Lundberg, 2014
   |  |-- †C. hooijeri Zijlstra, McFarlane, Van Den Hoek Ostende & Lundberg, 2014
   |  `-- †C. raton Zijlstra, McFarlane, Van Den Hoek Ostende & Lundberg, 2014
   |?-o Scotinomys Thomas, 1913; R. CA. (Brown mice)
   |  |-- S. xerampelinus
   |  `-- S. teguina
   |-- Rhagomys rufescens Thomas, 1917; R. SA. (Brazilian tree-mouse; brasilianpuuhiiri)
   |--o Tylomyini Reig, 1984 [taxonomic history]
   |  |-- Otonyctomys hatti Anthomy, 1932; R. CA. (jukataninyörotta)
   |  |-- Nyctomys sumichrasti de Saussure, 1860 [Hesperomys Murray, 1866 (Nyctomys) de Saussure, 1860, non Hesperomys Waterhouse, 1839; Nyctomys Bangs, 1902] R. NA. CA. (Vesper rat; keskiamerikanyörotta)
   |  |--o Tylomys Peters, 1866; R. NA. CA. SA. (Climbing rats)
   |  |  |-- T. bullaris
   |  |  |-- T. mirae
   |  |  |-- T. fulviventer [ssp.=>T. mirae?]
   |  |  |-- T. nudicaudus
   |  |  |-- T. panamensis
   |  |  |-- T. tumbalensis
   |  |  `-- T. watsoni
   |  `-- Ototylomys phyllotis (isokorvakiipijärotta)
   |-- Neotomini Merriam, 1894 [taxonomic history]
   |--+?- †Jacobsomys verdensis Czaplewski, 1987; L.Plioc. NA.
   |  `-- Peromyscini Hershkovitz, 1966 [taxonomic history]
   |-- Oryzomyini Vorontzov, 1959
   |--
   |--o Wiedomyini Reig, 1980
   |  |-- †Cholomys Reig, 1980; L.Pleist. SA.
   |  `-- Wiedomys pyrrhorhinos Hershkovitz, 1959; R. SA. (punakuonohiiri)
   |--
   |--
   |--
   `--

After McKenna & Bell, 1997

<==o Sigmodontinae
   |?- Andalgalomys
   |?- Baiomys
   |?- †Cordimys
   |?- Scotinomys
   |-- Rhagomys
   |--o Tylomyini
   |  |-- Otonyctomys
   |  |-- Nyctomys
   |  |-- Tylomys
   |  `-- Ototylomys
   |-- Neotomini
   |--+?- †Jacobsomys
   |  `-- Peromyscini
   |-- Oryzomyini
   |-- Thomasomyini
   |--o Wiedomyini
   |  |-- †Cholomys
   |  `-- Wiedomys
   |-- Akodontini
   |-- Phyllotini
   |-- Sigmodontini
   |-- Scapteromyini
   `-- Ichthyomyini

Reference(s):

  • McKenna, M. C. & Bell, S. K., (eds.) 1997: Classification of mammals – above the species level.
    –Columbia University Press, New York, 1997, xii-631

Reference(s):