After McKenna & Bell, 1997, Martín-Suárez & Mein, 1998, Ducroz, Volobouev & Granjon, 2001, Taylor, Denys & Mukerjee, 2003 (fig. 2b), Renaud et al., 2005, and “The Tree of Life”, with Recent species from Nowak, 1991

<==o Murinae Illiger, 1811 [taxonomic history] (Old World rats and mice; varsinaiset rotat & hiiret)
   |?-o †Huaxiamys Wu & L. Flynn, 1992; U.Mioc.-L.Plioc. As. [nomen nudum (McKenna & Bell, 1997)]
   |  |-- †H. primitivus
   |  `-- †H. downsi
   |?-o Deomyinae
   |  |--o Acomys I. Geoffroy Saint-Hilaire, 1838 [taxonomic history] L.Plioc.-R. Af., Plioc. Eu., R. Mid., U.Pleist.-R. As. (spiny mice; okahiiret) [14]
   |  |  |-- A. cahirinus (okahiiri)
   |  |  |-- A. cilicicus
   |  |  |-- A. cinerasceus
   |  |  |-- A. ignitus
   |  |  |-- A. kempi
   |  |  |-- A. louisae
   |  |  |-- A. minous
   |  |  |-- A. mullah
   |  |  |-- A. nesiotes
   |  |  |-- A. percivali
   |  |  |-- A. russatus (kultaokahiiri)
   |  |  |-- A. spinosissimus
   |  |  |-- A. subspinosus
   |  |  `-- A. wilsoni
   |  |-- Uranomys ruddi Dollman, 1909; R. Af.
   |  `--o Lophuromys Peters, 1874 [Lasiomys Peters, 1866 (non Lasiomys Burmeister, 1854, a syn. of Sigmodon] [incl. Neanthomys Toschi, 1947; Kivumys Dieterlen, 1987] R. Af. [9]
   |     |-- L. cinereus
   |     |-- L. flavopunctatus
   |     |-- L. luteogaster
   |     |-- L. medicaudatus
   |     |-- L. melanonyx
   |     |-- L. nudicaudus
   |     |-- L. rahmi
   |     |-- L. sikapusi
   |     `-- L. woosnami
   |?-o †Progonomys Schaup, 1938
   |  |?- †Progonomys debruijni Jacobs, 1978
   |  |?- †Progonomys yunnanensis Qiu & Storch, 1990
   |  |--+--+-- †Progonomys cathalai Schaup, 1938
   |  |  |  |-- †Progonomys woelferi Bachmayer & Wilson 1970
   |  |  |  |--o †Huerzelerimys Mein, Martín Suárez & Agustí, 1993; M.Mioc. Eu.
   |  |  |  |  |-- †H. turolensis
   |  |  |  |  `-- †H. vireti (Schaub, 1938) Mein et al., 1993 [Parapodemus vireti Schaub, 1938; Valerymys vireti (Schaub) Michaux, 1969]
   |  |  |  `--o †Anthracomys Schaub, 1938; U.Mioc. NAf., U.Mioc.-L.Plioc. Eu.
   |  |  |     `-- †A. lorenzi
   |  |  `--+?- †Parapodemus gaudryi (Dames, 1883) Schaub, 1938 [Mus gaudryi Dames, 1883] (nomen dubium, type lost)
   |  |     |?- Apodemus Kaup, 1826 [21] [relationship disputed by Martín-Suárez & Mein (1998)]
   |  |     |?-o †Rhagapodemus Kretzoi, 1959; U:Mioc.-L.Plioc. As., U.Mioc.-U.Plioc., Pleist. Eu., ?Plioc. Mid.
   |  |     |  |?- †R. athensis de Bruijn & Van Der Meulen, 1975
   |  |     |  |?- †R. azzarolii Angelone & Kotsakis, 2001
   |  |     |  |?- †R. ballesioi Mein & Michaux, 1970
   |  |     |  |?- †R. debruijni
   |  |     |  |?- †R. minor (Brandy, 1978) ==> †Rhagamys orthodon??
   |  |     |  |?- †R. vanderweerdi de Bruijn & van der Meulen, 1975
   |  |     |  `?-+-- †R. primaevus (Hugueney & Mein, 1965)
   |  |     |     `--+-- †R. hautimagnensis Mein & Michaux, 1970
   |  |     |        `-- †R. frequens Kretzoi, 1959
   |  |     `?- †Rhagamys orthodon (Hensel, 1856) Forsyth Major, 1905 [Mus orthodon Hensel, 1856]
   |  `--+-- †Progonomys hispanicus
   |     `--+--o †Castillomys Michaux, 1969 [incl. †Occitanomys Michaux, 1969; †Valerymys Michaux, 1969; †Hansdebruijnia Storch & Dahlmann, 1995] U.Mioc.-L.Plioc. As., U.Mioc.-L.Pleist. Eu., L.Plioc. Af.
   |        |  |-- †C gracilis
   |        |  `--+-- †C. crusafonti Michaux, 1969
   |        |     `-- †C. rivas Martín-Suárez & Mein, 1991 [incl.? C. plinensis Ruiz Bustos, 1991; C. crusafonti meini Ruiz Bustos, 1991]
   |        `--+-- †Centralomys de Giuli, 1989
   |           `--o †Occitanomys Michaux, 1969 [=? †Castillomys Michaux, 1969]
   |              |?- †O. alcalai Adrover, Mein & Moissenet, 1988
   |              |?- †O. brailloni Michaux, 1969
   |              |?- †O. debruijni Sen, Jaeger, Dalfes, Mazin & Bocherens, 1989
   |              |?-o †(Hansdebruijnia) Storch & Dahlmann, 1995
   |              |  `-- †O. (H.) neutrum
   |              |-- †Occitanomys sondaari
   |              `--+-- †Occitanomys adroveri (Thaler, 1966) Michaux, 1969 [Parapodemus adroveri Thaler, 1966]
   |                 `--o †Stephanomys Schaub, 1938; U.Mioc.-L.Pleist. Eu., L.Plioc. NAf.
   |                    |?- †S. margaritae Adrover, 1986
   |                    |?- †S. vandeweerdi Adrover, 1986
   |                    |-- †S. ramblensis
   |                    `--+-- †S. dubari
   |                       `--+-- †S. medius Cordy, 1976
   |                          `--+--+-- †S. donnezani (Depéret, 1890)
   |                             |  `-- †S. thaleri Lopéz-Martínez, Micheux & Hutterer, 1998
   |                             |-- †S. calveti Bachelet & Castillo, 1990
   |                             `--+-- †S. minor Gmelig Meyling & Michaux, 1973
   |                                `--+-- †S. priaetaensis Aguilar, Micheux, Delannoy & Guendon, 1993
   |                                   `--+-- †S. balcellsi Gmelig Meyling & Michaux, 1973
   |                                      `-- †S. progressus Cordy, 1976 [nomen nudum López-Martínez et al., 1998, synon. of †S. balcellsi]
   |?-o “Philippine relics”
   |  |--o Phloeomys Waterhouse, 1839; R. SEAs. [2]
   |  |  |-- P. cumingi (cuminginrotta)
   |  |  `-- P. pallidus
   |  |--o Crateromys Thomas, 1895; R. SEAs. [3]
   |  |  |-- C. australis
   |  |  |-- C. paulus
   |  |  `-- C. schadenbergi (pörrönhäntäpilvirotta)
   |  |--o Batomys Thomas, 1895 [incl. Mindanaomys Sanborn, 1953]; R. SEAs. [3]
   |  |  |-- B. dentatus
   |  |  |-- B. granti
   |  |  `-- B. salomonseni (mindanaonrotta)
   |  `--o Carpomys Thomas, 1895; R. SWAs. [2]
   |     |-- C. melanurus
   |     `-- C. phaeurus
   |?-o “Praomys -group”
   |  |--o Praomys Thomas, 1915; U.Plioc.-R. Af. [9]
   |  |  |-- P. delectorum
   |  |  |-- P. hartwigi
   |  |  |-- P. jacksoni (afrikanmetsärotta)
   |  |  |-- P. minor
   |  |  |-- P. misonnei
   |  |  |-- P. morio
   |  |  |-- P. mutoni
   |  |  |-- P. rostratus
   |  |  `-- P. tullbergi
   |  |--o Zelotomys Osgood, 1910 [incl. Ochromys Thomas, 1920] U.Plioc.-R. Af. [2]
   |  |  |-- Z. hildegardeae
   |  |  `-- Z. woosnami
   |  |--o Mastomys Thomas, 1915; U.Plioc.-R. Af. U.Pleist. SWAs. (multimammate rats) [8]
   |  |  |-- M. angolensis
   |  |  |-- M. coucha
   |  |  |-- M. erythroleucus
   |  |  |-- M. hildebrandtii
   |  |  |-- M. natalensis (moninisärotta)
   |  |  |-- M. pernanus
   |  |  |-- M. shortridgei
   |  |  `-- M. verheyeni
   |  |--o Myomys Thomas, 1915 [Myomys (Myomyscus) Shortridge, 1942] R. Af., R. SWAs. [7]
   |  |  |-- M. albipes
   |  |  |-- M. daltoni
   |  |  |-- M. derooi
   |  |  |-- M. fumatus (afrikanniittyrotta)
   |  |  |-- M. ruppi
   |  |  |-- M. verreauxii
   |  |  `-- M. yemeni
   |  |--o Hylomyscus Thomas, 1926; R. Af. [7]
   |  |  |-- H. aeta
   |  |  |-- H. alleni (kiipeilijähiiri)
   |  |  |-- H. baeri
   |  |  |-- H. carillus
   |  |  |-- H. denniae
   |  |  |-- H. parvus
   |  |  `-- H. stella
   |  |--o Stenocephalemys Frick, 1914 [Stenocephalomys lapsus calami?] R. EAf. [2]
   |  |  |-- S. albocaudata
   |  |  `-- S. griseicauda
   |  |-- Colomys goslingi Thomas & Wroughton, 1907 [Nilopegamys Osgood, 1928] Pleist.-R. CAf
   |  `-- Heimyscus fumosus Misonne, 1969; R. Af.
   |?-o “Australasian group” [Hydromyinae]
   |  |--o “Philippine relics II” (shrew-rats)
   |  |  |--o Apomys Mearns, 1905; R. SEAs. [8]
   |  |  |  |-- A. abrae
   |  |  |  |-- A. datae
   |  |  |  |-- A. hylocoetes
   |  |  |  |-- A. insignis
   |  |  |  |-- A. littoralis
   |  |  |  |-- A. microdon
   |  |  |  |-- A. musculus
   |  |  |  `-- A. sacobianus
   |  |  `--+--o Chrotomys Thomas, 1895; R. SEAs. [<Luzon, Mindoro>] [3]
   |  |     |  |-- C. gonzalesi
   |  |     |  |-- C. mindorensis
   |  |     |  `-- C. whiteheadi
   |  |     |--o Rhynchomys Thomas, 1895; R. SEAs. (shrew rat) [2]
   |  |     |  |-- R. isarogensis
   |  |     |  `-- R. soricoides
   |  |     |-- Archboldomys luzonensis Musser, 1982; R. SEAs. [<Luzon>]
   |  |     `-- Celaenomys silaceus Thomas, 1898; R. SEAs. [<Luzon>] (luzoninrotta)
   |  |--o “New Guinea group” [=? Anisomyini]
   |  |  |--o Hyomys Thomas, 1904; Pleist. R. Aust. [<N.Gui.>]
   |  |  |  |-- H. dammermani
   |  |  |  `-- H. goliath (karkeahäntärotta)
   |  |  |-- Anisomys imitator Thomas, 1904; Pleist. R. Aust. [<N.Gui.>]
   |  |  |--+--o Chiruromys Thomas, 1888; R. Aust. [<N.Gui.>]
   |  |  |  |  |-- C. forbesi (isopuuhiiri)
   |  |  |  |  |-- C. lamia
   |  |  |  |  `-- C. vates
   |  |  |  `--o Pogonomys Milne-Edwards, 1877; R. Aust. Pac.
   |  |  |     |-- P. championi
   |  |  |     |-- P. loriae
   |  |  |     |-- P. macrourus
   |  |  |     `-- P. sylvestris
   |  |  |--o Coccymys Menzies, 1990; R. Aust. [N.Gui.]
   |  |  |  |-- C. albidens
   |  |  |  `-- C. ruemmleri
   |  |  |--o Mallomys Thomas, 1898 [Dentrosminthus de Vis, 1907] Pleist. R. Aust. [<N.Gui.>]
   |  |  |  |-- M. aroaensis
   |  |  |  |-- M. gunung
   |  |  |  |-- M. istapantap
   |  |  |  `-- M. rothschildi (pehmeähäntärotta)
   |  |  `--o Macruromys Stein, 1933; R. Aust. [<N.Gui.>]
   |  |     |-- M. elegans (lännenpienihammasrotta)
   |  |     `-- M. major
   |  `--o Hydromyini [incl. Conilurini]
   |     |--o Conilurini
   |     |  |--o Conilurus Ogilby, 1838 [Hapalotis Lichtenstein, 1829 (non Hapalotis Hüpner, 1816, a genus of butterflies)] L.Pleist.-R. Aust. (brush-tailed tree rat; white-footed tree rat; rabbit rat)
   |     |  |  |-- C. albipes (white-footed tree rat)
   |     |  |  `-- C. penicillatus (brush-tailed tree rat)
   |     |  |--o Leporillus Thomas, 1906; L.Pleist.-R. Aust. (stick-nest rats; tillikins)
   |     |  |  |-- L. apicalis
   |     |  |  `-- L. conditor (tikkupesärotta)
   |     |  `--o Mesembriomys Palmer, 1906 [Ammomys Thomas, 1906 (non Ammomys Bonaparte, 1831, a subgenus of Microtus?)] ?Pleist. R. Aust. (golden-backed tree rats; black-footed tree rats)
   |     |     |-- M. gouldii
   |     |     `-- M. macrurus
   |     |--+-- Mastacomys Thomas, 1882 [treated as a synon. of Pseudomys by McKenna & Bell, 1997]
   |     |  |-- Pseudomys Gray, 1832 [taxonomic history] Plioc. L.Pleist.-R. Aust. (broad-toothed rat; Australian false mice; Australian field mice) [25]
   |     |  `--o Notomys Lesson, 1842 [incl. Podanomalus Waite, 1898; Thylacomys Waite, 1898; Ascopharynx Waite, 1900] Pleist.-R. Aust. (hopping mice) [9]
   |     |     |-- N. alexis
   |     |     |-- N. amplus
   |     |     |-- N. aquilo
   |     |     |-- N. cervinus
   |     |     |-- N. fuscus
   |     |     |-- N. longicaudatus
   |     |     |-- N. macrotis
   |     |     |-- N. mitchellii
   |     |     `-- N. mordax
   |     |--o Zyzomys Thomas, 1909 [incl. Laomys Thomas, 1909] ?Pleist.-R. Aust. (rock rats)
   |     |  |-- Z. argurus
   |     |  |-- Z. maini
   |     |  |-- Z. palatilis
   |     |  |-- Z. pedunculatus
   |     |  `-- Z. woodwardi
   |     |--o Leggadina Thomas, 1910 [Pseudomys (Leggadina) Thomas, 1910] Pleist.-R. Aust. 
   |     |  |-- L. forresti
   |     |  `-- L. lakedownensis
   |     |--o Uromys Peters, 1867 [Gymnomys Gray, 1867] [incl. Cyromys Thomas, 1910; Melanomys Winter, 1983 (non Melanomys Thomas, 1902, a synon. of Oryzomys, a sigmodontine murid)] Pleist. R. Aust., R. SEAs. Pac.
   |     |  |-- U. anak
   |     |  |-- U. caudimaculatus
   |     |  |-- U. hadrourus
   |     |  |-- U. imperator
   |     |  |-- U. neobritanicus
   |     |  |-- U. porculus
   |     |  |-- U. rex
   |     |  |-- (Cyromys) Thomas, 1910
   |     |  `-- (Uromys) Peters, 1867
   |     |--+--o Solomys Thomas, 1922 [incl. Unicomys Troughton, 1935] R. Pac. [<Solomon Islands>]
   |     |  |  |-- S. ponceleti
   |     |  |  |-- S. salamonis
   |     |  |  |-- S. salebrosus
   |     |  |  |-- S. sapientis
   |     |  |  `-- S. spriggsarum
   |     |  `--o Melomys Thomas, 1922 [incl. Paramelomys Rümmler, 1936; Mammelomys Menzies, 1996; Protochromys Menzies, 1996] Pleist.-R. Aust., R. SEAs. Pac. N.Gui.
   |     |     |-- M. aerosus
   |     |     |-- M. bougainville
   |     |     |-- M. burtoni
   |     |     |-- M. capensis
   |     |     |-- M. cervinipes
   |     |     |-- M. fellowsi
   |     |     |-- M. fraterculus
   |     |     |-- M. gracilis
   |     |     |-- M. lanosus
   |     |     |-- M. leucogaster
   |     |     |-- M. levipes
   |     |     |-- M. lorentzii
   |     |     |-- M. mollis
   |     |     |-- M. moncktoni
   |     |     |-- M. obiensis
   |     |     |-- M. platyops
   |     |     |-- M. rattoides
   |     |     |-- M. rubex (ylänköbanaanirotta)
   |     |     |-- †M. rubicola (Bramble Cay Melomys) [last seen on location 2009, not in survey on 2014, declared extinct 2019]
   |     |     |-- M. rufescens
   |     |     `-- M. spechti
   |     `--o Hydromyini sensu stricto?
   |        |--+-- Mayermys ellermani Laurie & Hill, 1954;; R. Aust. [N.Gui.] (yksihammaspäästäishiiri)
   |        |  |-- Neohydromys fuscus Laurie, 1952; R. Aust. [N.Gui.] (lyhythäntäpäästäishiiri)
   |        |  |--o Pseudohydromys Rümmler, 1934; R. Aust. [N.Gui.]
   |        |  |  |-- P. murinus
   |        |  |  `-- P. occidentalis
   |        |  |--o Microhydromys Tate & Archbold, 1941; R. Aust. [N.Gui.]
   |        |  |  |-- M. musseri
   |        |  |  `-- M. richardsoni (uurteishammaspäästäishiiri)
   |        |  `--o Paraleptomys Tate & Archbold, 1941; R. Aust. [N.Gui.]
   |        |     |-- P. rufilatus
   |        |     `-- P. wilhelmina
   |        |--+-- Xeromys myoides Thomas, 1889; R. Aust. (valesuorotta)
   |        |  |-- Crossomys moncktoni Thomas, 1907; R. Aust. [N.Gui.] (korvatonvesirotta)
   |        |  `--o Leptomys Thomas, 1897; R. Aust. [N.Gui.]
   |        |     |-- L. elegans (pitkäjalkavesirotta)
   |        |     |-- L. ernstmayri
   |        |     `-- L. signatus
   |        `--+-- Parahydromys asper Poche, 1906 [Drosomys Thomas, 1906; Limnomys Thomas, 1906 (non Limnomys Mearns, 1905, another murine)] (karkeakarvavesirotta)
   |           `--o Hydromys É. Geoffroy Saint-Hilaire, 1804 [incl. Baiyankomys Hinton, 1943] Pleist-R. Aust. R. SEAs., R. Pac. Oc. [New Britan]
   |              |-- H. chrysogaster (australianvesirotta)
   |              |-- H. habbema (vuorivesirotta)
   |              |-- H. hussoni
   |              |-- H. neobrittanicus
   |              `-- H. shawmayeri
   |?-o “Arvicanthines”
   |  |--o Aethomys Thomas, 1915 [incl. Micaelamys Ellerman, 1941] [Epimys (Anthomys) Thomas, 1915; Rattus (Micaelamys) Ellerman, 1941] L.Plioc.-R. Af. [10]
   |  |  |-- A. bocagei
   |  |  |-- A. chrysophilus
   |  |  |-- A. granti
   |  |  |-- A. hindei (hindinpensasrotta)
   |  |  |-- A. kaiseri
   |  |  |-- A. namaquensis
   |  |  |-- A. nyikae
   |  |  |-- A. silindensis (silindanpensasrotta(!!"selindan"))
   |  |  |-- A. stannarius
   |  |  `-- A. thomasi
   |  |--o Lemniscomys Trouessart, 1881; U.Plioc., ?L.Pleist., M.Pleist.-R. Af. [10]
   |  |  |-- L. barbarus (single-striped mouse; raitahiiri)
   |  |  |-- L. bellieri
   |  |  |-- L. griselda
   |  |  |-- L. hoogstraali
   |  |  |-- L. linulus
   |  |  |-- L. macculus
   |  |  |-- L. mittendorfi
   |  |  |-- L. rosalia
   |  |  |-- L. roseveari
   |  |  `-- L. striatus (täpläraitahiiri)
   |  |--o Grammomys Thomas, 1915; U.Plioc.-R. Af (woodland mice) [11]
   |  |  |-- G. aridulus
   |  |  |-- G. buntingi
   |  |  |-- G. caniceps
   |  |  |-- G. cometes
   |  |  |-- G. dolichurus (puurotta)
   |  |  |-- G. dryas
   |  |  |-- G. gigas
   |  |  |-- G. ibeanus
   |  |  |-- G. macmillani
   |  |  |-- G. minnae
   |  |  `-- G. rutilans (peterinpuurotta)
   |  |--o Oenomys Thomas, 1904; U.Plioc. R. Af. [2]
   |  |  |-- O. hypoxanthus
   |  |  `-- O. ornatus
   |  |--o Thallomys
   |  |  |-- T. loringi
   |  |  |-- T. nigricauda
   |  |  |-- T. paedulcus
   |  |  `-- T. shortridgei
   |  |--+-- Stochomys longicaudatus Thomas, 1926; R. Af.
   |  |  `--o Hybomys Thomas, 1910 [incl. Typomys Thomas, 1911] [6]
   |  |     |-- H. basilii
   |  |     |-- H. eisentrauti
   |  |     |-- H. lunaris
   |  |     |-- H. planifrons
   |  |     |-- H. trivirgatus (kolmijuovahiiri)
   |  |     `-- H. univittatus (peterinjuovahiiri)
   |  |--+-- Desmomys harringtoni Thomas, 1910; R. EAf.
   |  |  `-- Rhabdomys pumilio Thomas, 1916; U.Plioc., ?Pleist., R. Af. (striped mouse; four-striped grass mouse)
   |  `--+-- Mylomys dybowskii Thomas, 1906; R. Af.
   |     |--o Arvicanthis Lesson, 1842 [taxonomic history] L.Plioc., U.Pleist.-R. SWAs., U.Plioc.-M.Pleist., ?U.Pleist., R., EAf. [5]
   |     |  |-- A. abyssinicus
   |     |  |-- A. blicki
   |     |  |-- A. nairobae
   |     |  |-- A. neumanni
   |     |  `-- A. niloticus (niilinrotta)
   |     `--+--o Pelomys Peters, 1852 [Komemys de Beaux, 1924] L.Plioc. As.; U.Plioc.-R. Af. (groove-toothed rats) [5]
   |        |  |-- P. campanae
   |        |  |-- P. fallax
   |        |  |-- P. hopkinsi
   |        |  |-- P. isseli (afrikanpurorotta)
   |        |  `-- P. minor (pikkupurorotta)
   |        `?-o Otomyini (laminate-toothed rats; korvarotat)
   |           |--o †Euryotomys T.N. Pocock, 1976; L.Plioc. EAf.
   |           |  |-- †E. pelymoides
   |           |  `-- †E. bolti
   |           `--o Parotomys Thomas, 1912 [incl. Liotomys Thomas, 1918] M.Pleist.-R. SAf. (whistling rats) [2]
   |              |-- Parotomys littledalei
   |              `--+-- Otomys unisulcatus
   |                 `--+-- Parotomys brantsii
   |                    `--o Otomys F.Cuvier, 1824 sensu stricto; U.Plioc.-R. Af. [taxonomic history] [12]
   |                       |?- †O. sp. cf. O. sloggetti
   |                       |?- †O. sp. cf. O. petteri
   |                       |-- O. sloggetti
   |                       `--+--+-- †O. sp. cf. O. gracilis
   |                          |  `-- O. saundersiae
   |                          `--+-- O. denti
   |                             `--+-- O. irroratus
   |                                `--+-- O. tropicalis tropicalis
   |                                   `--+--+-- †O. petteri
                                          |  `--+-- O. angoniensis (angoninkorvarotta)
   |                                      |     `--+-- O. maximus (isokorvarotta)
   |                                      |        `-- O. tropicalis burtoni
   |                                      `--+-- O. anchietae anchietae
   |                                         |?- O. anchietae lacustris
   |                                         `--+-- O. anchietae barbouri
   |                                            `--+-- O. occidentalis
   |                                               `--+-- O. laminatus
   |                                                  `--o O. typus
   |                                                     |-- O. t. jacksoni
   |                                                     `-- O. t. typus
   `?-o “Rattus -group”
      |?- Halmaheramys bokimekot Fabre, Pagès, Musser, Fitriana, Semiadi & Helgen, 2013
      |--o Maxomys Sody, 1936; R. SEAs. [Indonesia & Philippines]
      |  |-- M. alticola (vuoriokarotat)
      |  |-- M. baeodon
      |  |-- M. bartelsii
      |  |-- M. dollmani
      |  |-- M. hellwaldii
      |  |-- M. hylomyoides
      |  |-- M. inas
      |  |-- M. inflatus
      |  |-- M. moi
      |  |-- M. musschenbroekii
      |  |-- M. ochraceiventer
      |  |-- M. pagensis
      |  |-- M. panglima
      |  |-- M. rajah
      |  |-- M. surifer
      |  |-- M. wattsi
      |  `-- M. whiteheadi
      `--+--o “Dacnomys Division”
         |  |?- Chiromyscus chiropus Thomas, 1925; R. SEAs.
         |  |?- Saxatilomys paulinae Musser, Smith, Robinson & Lunde, 2005; R. SEAs.
         |  |--o Niviventer Marshall, 1976; U.Plioc.-R. S.-SEAs.
         |  |  |-- N. andersoni
         |  |  |-- N. brahma
         |  |  |-- N. confucianus
         |  |  |-- N. coxingi
         |  |  |-- N. cremoriventer
         |  |  |-- N. culturatus
         |  |  |-- N. eha
         |  |  |-- N. excelsior
         |  |  |-- N. fulvescens
         |  |  |-- N. hinpoon
         |  |  |-- N. langbianis
         |  |  |-- N. lepturus
         |  |  |-- N. niviventer
         |  |  |-- N. rapit
         |  |  `-- N. tenaster
         |  `--+-- Dacnomys millardi Thomas, 1916; R. S.-SEAs.
         |     `--o Leopoldamys Ellerman, 1947; U.Plioc.-R. SEAs.
         |        |-- L. edwardsi
         |        |-- L. neilli
         |        |-- L. sabanus
         |        `-- L. siporanus
         `--+--o Berylmys Ellerman, 1947 [Rattus (Berylmys) Ellerman, 1947] L.-M.Pleist. R. As., R. SEAs.
            |  |-- B. berdmorei (pienivalkohammasrotta)
            |  |-- B. bowersi
            |  |-- B. mackenziei
            |  `-- B. manipulus
            |--o Tarsomys Mearns, 1905; R. SEAs. [Mindanao]
            |  |-- T. apoensis
            |  `-- T. echinatus
            |-- Limnomys sibuanus Mearns, 1905; R. SEAs. [Mindanao]
            |--o Bandicota Gray, 1873 [incl. Gunomys Thomas, 1907] R. As. (bandicoot rats)
            |  |-- B. bengalensis (intianrotta)
            |  |-- B. indica (intianisorotta)
            |  `-- B. savilei
            |--o Bullimus Mearns, 1905; R. SEAs. [Philippines]
            |  |-- B. bagobus
            |  `-- B. luzonicus
            |--o Sundamys Musser & Newcomp, 1983; R. SEAs.
            |  |-- S. infraluteus
            |  |-- S. maxi
            |  `-- S. Mülleri
            `-- Rattus Fischer de Waldhein, 1803 [taxonomic history] L.Pleist.-R., As., Aust.; M.Pleist.-R. SEAs..; R. Ind. Oc., Pac. Oc. (rats; rotat)

Murinae without phylogenetic association:

    †Ratchaburimys Chaimanee, Suteethorn, Triamwichanon & Jaeger, 1996
    Millardia Thomas, 1911 [incl. Grypomys Thomas, 1911; Guyia Thomas, 1917; Millardomys Sody, 1941] ?L.Pleist.-R. As.
        M. gleadowi
        M. kathleenae
        M. kondana
        M. meltada
    Cremnomys Wroughton, 191 [incl. Madromys Sody, 1941] R. SAs.
        C. blanfordi
        C. cutchicus
        C. elvira
    Diomys crumpi Thomas, 1917; R. SAs.
    Micromys Dehne, 1841; U.Mioc.-L.Plioc., Pleist.-R. As., U.Mioc.-R. Eu.
        †M. bendai
        †M. chalceus
        †M. cingulatus Storch & Dahlmann, 1995
        ?†M. coronensis (Schaub, 1938) [†Parapodemus coronensis Schaub, 1938]
        †M. kozaniensis
        †M. paricioi
        †M. steffensi
        †M. tedfordi Wu & Flynn, 1992
        †M. praeminutus
        M. minutus (Pallas, 1771) [incl. M. danubialis; M. agilis Dehne, 1841] (harvest mouse; vaivaishiiri)
            M. m. minutus
            M. m. soricinus
            M. m. subobscurus
            M. m. pratensis
            M. m. ussuricus
    Vandeleuria Gray, 1842; L.Pleist.-R. As. (Long-Tailed Tree Mice; palmuhiiret)
        V. nilagirica [ssp. => V. oleracea]
        V. nolthenii Phillips, 1929 (Ceylon Highland Long-Tailed Tree Mouse, Nolthenius's Long-tailed Climbing Mouse; ceyloninpalmuhiiri)
        V. oleracea (Bennett, 1832) (Indian Long-Tailed Tree Mouse; palmuhiiri)
    Vernaya fulva Anthony, 1941 [Octopdomys Sody, 1941] U.Plioc.-M.Pleist. R. As.
    Chiropodomys Peters, 1868 [incl. Insulaemus Taylor, 1934] U.Plioc., R. As.
        †C. penicillatus
        C. calamianensis
        C. gliroides (pensselihäntähiiri)
        C. karlkoopmani
        C. major
        C. muroides
        C. pusillus
    Hapalomys Blyth, 1859; U.Plioc., U.Pleist.-R. As. [2]
        H. delacouri
        H. longicaudatus
    Tokudaia Kuroda,1943 [Acanthomys Tokuda, 1941 (non Acanthomys Lesson, 1842, a synon. of Acomys; non Acanthomys Gray, 1867, a synon. of Rattus); Tokudamys Johnson, 1946] U.Pleist.-R. As.
        T. muenninki
        T. osimensis (japaninokahiiri)
    †Microtia elva Freudenthal, 1976; U.Mioc. Eu.
    †Paraethomys F.Petter, 1968
        †P. abaigari Adrover, Mein & Moissenet, 1988
        †P. athmeniae
        †P. belmezi Castillo, 1990
        †P. meini (Micheux, 1969)
        †P. jaegeri Montenat & de Bruijn, 1976
        †P. chikeri Jaeger, 1975
        †P. miocaenicus
        †P. pusillus
        †P. anomalus
        †P. rbiae
        †P. darelbeidae
        †P. filfilae
    †Orientalomys de Bruijn & van der Meulen, 1975 [incl. †Euxinomys Sen, 1975] U.Mioc.-U.Plioc. As., L.-U.Plioc. Eu.
        †O. nihewanicus Zheng, 1981
        †O. similis (Argyropulo & Pidoplichka, 1939) de Bruijn & van der Meulen, 1975 [Parapodemus similis Argyropulo & Pidoplichka, 1939]
        †O. galaticus
        †O. sibiricus
    †Chardinomys Jacobs & Li, 1982 [incl. Teilhardomys Cordy, 1977 (nomen nudum)] L.Plioc.-L.Pleist. As.
        †O. yusheensis
        †O. louisi
        †O. schaubi
    †Castromys Martín-Suárez & Freudenthal, 1994; U.Mioc. Eu.
        †C. inflatus
    †Beremendimys Kretzoi, 1956; 
    Mus [taxonomic history] (mice; hiiret) [38]
    Muriculus imberbis Thomas, 1903; R. EAf.
    †Saidomys James & Slaughter, 1974; U.Mioc., U.Plioc. Af., L.Plioc. Eu.
        †S. afarensis
        †S. natrunensis James & Slaughter, 1974
    †Yunomys wui Qiu & Storch, 1990
    †Parapelomys Jacops, 1978; U.Mioc.-U.Plioc. As.
    Hadromys humei Thomas, 1911; L.Pleist.-R. As.
    Golunda ellioti Gray, 1837; ?U.Plioc., EAf; U.Plioc., Pleist., R., SAs.
    †Dilatomys Sen, 1983; L.Plioc. CAs.
    Dasymys Peters, 1875; U.Plioc.-L.Pleist. R. Af. [5]
        D. foxi
        D. incomtus (afrikansuorotta)
        D. montanus
        D. nudipes
        D. rufulus
    Lamottemys okuensis F.Petter, 1986; R. WAf.
    Dephomys Thomas, 1926; R. Af. [2]
        D. defua
        D. eburnea
    †Canariomys tamarani Crusafont-Pairó & F. Patter, 1964; Pleist.-R. At. [Canary islands, till 2000 B.P.]
    †Malpaisomys insularis Hutterer, López-Martínez & Michaux, 1988; Pleist.-R. At. [Canary islands]
    Nilopegamys Osgood, 1908; R. EAf. (Ethiopian water mouse) [treated as a synonym of Colomys elsewhere in McKenna & Bell, 1997]
    Malacomys Milne-Edwards, 1877; R. Af. [5]
        M. cansdalei
        M. edwardsi
        M. longipes (pitkäjalkarotta)
        M. lukolelae
        M. verschureni
    †Kritimys kiridus (Bate) Kuss & Misonne, 1968; M.Pleist. Mid. [Crete]
    Nesokia Gray, 1842 [Spalacomys Peters, 1861; Nesocia Blanford, 1891] [incl. Erythronesokia Khjuria, 1981] Plioc., ?L.Pleist. R. As., U.Pleist.-R. NEAf. (pest rats) [2]
        N. bunnii
        N. indica (lyhythäntärotta)
    Diplothrix legatus Thomas, 1916; U.Pleist.-R. EAs. [Ryukyu islands]
    Palawanomys furvus Musser & Newcomp, 1983; R. SWAs. [Palawan]
    Kadarsanomys sodyi Musser, 1981; SEAs. [Java]
    Tryphomys adustus Miller, 1910; R. SEAs. [Luzon]
    Abditomys latidens Musser, 1982; R. SEAs. [Luzon]
    Taeromys Sody, 1941 [incl. Arcuomys Sody, 1941] R. SEAs. [Sulawesi] [6]
        T. arcuatus
        T. callitrichus
        T. celebensis
        T. hamatus
        T. punicans
        T. taerae
    Paruromys Ellerman, in Laurie & Hill, 1954; R. SEAs. [Sulawesi] [2]
        P. dominator
        P. ursinus
    †Hooijeromys Musser, 1981; U.Pleist. SEAs. [Flores]
    Papagomys Sody, 1941; R. SEAs. [Flores]
        P. armandvillei
        P. theodorverhoeveni
    Komodomys rintjanus Musser & Boeadi, 1980; R. SEAs. [Rintja, Padar & Flores Islands]
    Bunomys Thomas, 1910 [incl. Frateromys Sody, 1941] R. SEAs. [Sulawesi] [7]
        B. andrewsi
        B. chrysocomus
        B. coelestis
        B. fratrorum
        B. heinrichi
        B. penitus
        B. prolatus
    Paulamys Musser, in Musser, van de Weerd & Strasser, 1986 [†Florensomys Musser, 1981, non Florensomys Fries, Hibbard & Dunkle, 1955, a geomyoid] R. SEAs. [Flores]
        †P. guanajuatoensis
        P. naso
    Stenomys Thomas, 1910 [incl. Nesoromys Thomas, 1920] R. SEAs. [Seram & New Guinea] [5]
        S. ceramicus
        S. niobe
        S. richardsoni
        S. vandeuseni
        S. verecundus (hoikkarotta)
    †Wushanomys Zheng, 1993; U.Plioc.-L.Pleist. EAs.
    †Qianomys Zheng, 1993; M.Pleist. EAs.
    Srilankamys ohiensis Musser, 1981; R. SAs. [Ceylon]
    Lenothrix canus Miller, 1903 R. SEAs. (gray tree rat)
    Pithecheir F.Cuvier, 1838 [Pithecochirus Gloger, 1841; Pithechirus Agassiz, 1842; Pitechirus Kaup, 1844 (lapsus calami); Pitcheir Schinz, 1845; Pithechir Jentink, 1892] [incl. Pithecheirops Emmons, 1993] R. SEAs. [2]
        P. melanurus
        P. parvus
    Eropeplus canus Miller & Hollister, 1921; R. SWAs. [Sulawesi] (Sulawesi soft-furred rat)
    Lenomys meyeri Thomas, 1898; R. SWAs. [Sulawesi]
    Margaretamys Musser, 1981; SWAs. [Sulawesi] [3]
        M. beccarii
        M. elegans
        M. parvus
    Haeromys Thomas, 1911; R. SWAs. [Borneo, Sulawesi, Palawan] [3]
        H. margarettae (raneehiiri)
        H. minahassae
        H. pusillus (pikkuraneehiiri)
    Anonymomys mindorensis Musser, 1981; R. SEAs. [Mindanao]
    Crunomys Thomas, 1897; R. SEAs. [4]
        C. celebensis
        C. fallax
        C. melanius
        C. rabori
    Lorentzimys nouhuysi Jentick, 1911; R. Aust. [N.Gui.] (uudenguineanhyppyhiiri)
    Pogonomelomys Rümmler, 1936 [incl. Abelomelomys Menzies, 1990] R. SEAs. Aust. [N.Gui.]
        P. bruijni
        P. mayeri
        P. sevia
    Xenuromys barbatus Tate & Archbold, 1941; R. Aust. [N.Gui.] (matkijapuurotta)
    †Spelaeomys florensis Hooijer, 1957; R. SEAs. [<Flores>]
    †Coryphomys buehleri Schaub, 1937; R. SEAs. [<Timor>]

    “Sulawesi shrew-rats”
        Echiothrix Gray, 1867 [Craurothrix Thomas, 1896] R. SEAs. [Sulawesi]
            E. centrosa Miller & Hollister, 1921 (Central Sulawesi spiny-rat)
            E. leucura Gray, 1867 (Sulawesi spiny-rat; sulawesinokarotta)
        Melasmothrix naso Miller & Hollister, 1921 (Sulawesian shrew-rat ) R. SWAs. [Sulawesi]
        Tateomys Musser, 1969; R. SWAs. [Sulawesi]
            T. macrocercus Musser, 1982 (Long-tailed shrew-rat)
            T. rhinogradoides Musser, 1969 (Tate's shrew-rat)
        Paucidentomys vermidax Esselstyn, Achmadi & Rowe, 2012 (longnose shrew-rat) R. SEAs. [Sulawesi]
        Sommeromys macrorhinos Musser & Durden, 2002 (Sommer’s Sulawesi Rat) R. SEAs. [Sulawesi]

Murinae incertae sedis:

    †“Mus” hipparionum Schlosser, 1924 [Parapodemus hipparionum (Schlosser) Schaub, 1938; Karnimata hipparionum (Schlosser, 1924) Jacobs, 1978]
    †“Parapodemus” coronensis Schaub, 1938 [chimera?]
    †“Mastomys” colberti Lewis, 1939 [Parapodemus colberti (Lewis) Misonne, 1969; Rattus colberti (Lewis) Black, 1972; Karnimata colberti (Lewis) Jacobs, 1978]
    Thamnomys Thomas, 1907; U.Pleist.-R. Af.
        T. kempi Dollman, 1911 (Kemp's Thicket Rat)
        T. major Hatt, 1934 (Hatt's Thicket Rat)
        T. venustus Thomas, 1907 (Charming Thicket Rat)

Reference(s):