After Rieppell, 1994, Evans & Barbadillo, 1998 and Caldwell, 1999

Alternative phylogeny of Squamata after Evans & Barbadillo, 1998

Alternative phylogeny of Squamata after Lee, 2000

Alternative molecular phylogeny of (Recent) Squamata after Vidal & Hedges, 2005

<==o Squamata Oppel, 1811 [non Merrem, 1820] (suomumatelijat; squamates)
   |--o †Bavarisauridae sensu Evans & Barbadillo, 1998 [have been treated as basal Gekkotans]
   |  |-- †Bavarisaurus U. Jur. Eu.
   |  `-- †Palaeolacerta U. Jur. Eu. 
   `--+-- †Scandensia ciervensis Evans & Barbadillo, 1998
      |--o †Eichstaettisauridae Kuhn, 1958 sensu Alifanov, 2000 [phylogenetic position after Evans & Barbadillo, 1998, has been treated as basal Scincomorphs]
      |  |-- †Eichstaettisaurus U. Jur. Eu. [Broilisaurus Kuhn, 1938]
      |  `-- †Globaura venusta Borsuk-Bialynicka, 1988, U. Cret., EAs.
      `--+-- †Ardeosaurus brevipes [Eichstattosaurus] U. Jur. Eu. [Ardeosauridae]
         `--o “Neosquamata” [last common ancestor of all modern squamates]
            |-- Iguania Cope, 1864 (iguaanimaiset liskot; Iguania-like lizards)
            `--o Scleroglossa sensu Estes, 1988
               |?- Pythonomorpha Cope, 1869 sensu Caldwell, 1999 (snakes & sealizards; käärmeet & meriliskot) [for more common position see Platynota]
               `--o Scleroglossa sensu Rieppel, 1996
                  |?- †Eolacerta robusta Nöth, 1940 [Iguanosaurus haupti Kuhn, 1944; Iguanosauriscus haupti Kuhn, 1958; Eolacerta robusta Estes, 1983] [problematic, see Anguimorpha or Lacertidae for alternative positions]
                  |?-o †Carusiidae Borsuk-Bialynicka, 1987 [Carolinidae Borsuk-Bialynicka, 1985, Carusioidea Borsuk-Bialynicka, 1987 sensu Gao & Norell, 1998] [are scincomorps? (Alifanov, 2000) or anguimorphs? (Evans & Wang, 2005)]
                  |  |?- †Dalinghosaurus longidigitus Ji, 1998; L.Cret. EAs.
                  |  |-- †Carusia intermedia Borsuk-Bialynicka, 1987 [Carolina intermedia Borsuk-Bialynicka, 1985 non Thompson, 1880]
                  |  `-- †Shinisauroides latipalatum Borsuk-Bialynicka, 1985
                  `--o Autarchoglossa [last common ancestor of Scincus & Varanus]
                     |-- Anguimorpha Fürbringer, 1900 [all autarchoglossans closer to Varanus & Anguis than Scincus]
                     `--o Scincogekkonomorpha
                        |?- †Yabeinosaurus Endo & Shikama, 1942 [incl.? Jeholacerta Ji & Ren, 1999] L.Cret. EAs. ?U. Jur. SAs. [paraphyletic Ardeosauridae]
                        |-- Scincomorpha Camp, 1923 (Scincus-like lizards; skinkkimäiset liskot)
                        `--o Nyctisauria sensu Lee, 2000
                           |-- Amphisbaenia Gray, 1844 [Annulata] (wormlizards; matoliskot)
                           `--+-- Didamidae [2/15]
                              `-- Gekkota Cuvier, 1817 sensu stricto [Nyctisauria] (Gecko-like lizards; gekkomaiset liskot)

Squamata incertae sedis:

Huehuecuetzpalli mixtecus Reynoso, 1998
    †“Conicodontosaurus” Gilmore, 1943
        †C. djadocbtaensisC. kanhsienensisC. qinlingensis Li, Xue & Liu, 2004

Reference(s):