After Broughton & Gold, 2000, with species from Froese & Pauly, 2001 [“The Fishbase”]

<==o Cyprinella Girard, 1856 ()? [30]
   |?- C. monacha (Cope, 1868) (Spotfin chub) [falls out of the monophyletic Cyprinella sensu Broughton & Gold, 2000]
   `--+-- C. callistia (Jordan, 1877) (Alabama shiner)
      `--+--+-- C. gibbsi (Howell & Williams, 1971) (Tallapoosa shiner)
         |  `-- C. trichroistia (Jordan & Gilbert, 1878) (Tricolor shiner)
         `--+--+-- C. caerulea (Jordan, 1877) (Blue shiner)
            |  `--+--+-- C. callisema (Jordan, 1877) (Ocmulgee shiner)
            |     |  `-- C. nivea (Cope, 1870) (Whitefin shiner)
            |     `--+-- C. leedsi (Fowler, 1942) (Bannerfin shiner)
            |        `--+-- C. callitaenia (Bailey & Gibbs, 1956) (Bluestripe shiner)
            |           `-- C. zanema (Jordan & Brayton, 1878) (Santee chub)
            `--+--+-- C. xaenura (Jordan, 1877) (Altamaha shiner)
               |  `--+-- C. labrosa (Cope, 1870) (Thicklip chub)
               |     `-- C. pyrrhomelas (Cope, 1870) (Fieryblack shiner)
               `--+--+--+-- C. analostana Girard, 1859 (Satinfin shiner)
                  |  |  `-- C. chloristia (Jordan & Brayton, 1878) (Greenfin shiner)
                  |  `--+-- C. proserpina (Girard, 1856) (Proserpine shiner)
                  |     `--+-- C. camura (Jordan & Meek, 1884) (Bluntface shiner)
                  |        `-- C. galactura (Cope, 1868) (Whitetail shiner)
                  `--+--+-- C. venusta Girard, 1856 (Blacktail shiner)
                     |  `--+-- C. spiloptera (Cope, 1867) (Spotfin shiner)
                     |     `-- C. whipplii Girard, 1856 (Steelcolor shiner)
                     `--+-- C. lepida Girard, 1856 (Plateau shiner)
                        |-- C. lutrensis (Baird & Girard, 1853) [Leuciscus bubalinus Baird & Girard] (Red shiner)
                        `-- C. formosa (Girard, 1856) (Beautiful shiner)

Cyprinella not treated by Broughton & Gold, 2000:

    C. alvarezdelvillari Contreras-Balderas & Lourdes Lozano, 1994
    C. bocagrande (Chernoff & Miller, 1982)
    C. garmani (Jordan, 1885)
    C. panarcys Hubbs & Miller, 1978 (Conchos shiner)
    C. rutila (Girard, 1856)
    C. xanthicara (Minckley & Lytle, 1969)

Reference(s):