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A . A A A B & B BH & Bh B & B B & B C & C@ Ch C & C C C C C D D D D( D0 D@ DH D` D D " D D D D D E E , E EP Eh Ep Ex $ E " E E r E F` Fh F F F F F F F R F GH N GX G G G $ G G $ H H0 $ HH Hp $ H H $ H H $ H I I( IH IX Ih Ix I I I I I " I I I " J J( J0 J8 JP Jh Jx J J J $ J $ J J r K K K K * K K L L L L8 LP Lh L L L L L L M M( M@ MX Mp M M M M M M N N N( N8 NH NP NX Nh Np N N N " N N N " N O O0 O@ 0 OP O O O O $ O $ O P r P P P P P P R Q QX Q` D Q Q Q Q $ Q R R( $ R0 $ RX R R R R R R R R R S S $ S SH SP " SX S S S S
S S S S T T $ T $ T8 T` r Tx T T U U8 $ UP Ux U $ U U U U U V V V V( V0 V@ VH $ V` V V " V V V V , V W W W( W0 WH WP WX W` Wh r W W X X( X8 X@ XH XP XX X` Xh Xp X X X X X X X X X X Y Y Y Y( Y0 Y8 Y@ YH r Y` Y Y Z Z Z( Z@ ZH ZP ZX Z` Zh Zp Zx Z Z Z Z Z Z Z Z Z Z Z Z [ [ [ [( [0 [@ [H [` [h [p [x [ [ [ [ [ [ [ [ [ \ \ \ \ \@ \H \P \X , \` \ \ \ \ \ \ \ \ \ ] ] ] ]( , ]0 ]` ]h ]p ]x ] ] ] ] ] ] ] ] ^ ^ ^ ^ ^ ^( ^@ ^P ^p ^ ^ ^ ^ ^ ^ ^ ^ ^ ^ _ _ _( _0 _8 _@ _H _P _` _h _ _ _ _ _ _ _ _ ` ` ` ` , ` `P `X `` `h `p ` ` ` ` ` ` ` ` , ` a a( a0 a8 a@ aH aX a` ah ax a a a a a a a a b b b0 bP bX b` bh bp bx b b b b b b b b b c c c c c c( " c0 c8 c@ cH cP cX c` cp 0 cx ( c . c , d * d0 d` dh dp dx d $ d d d r d eX e` eh ep
ex e e e e 0 e 0 f 0 f0 0 f` 0 f f f f f f g g g g( g0 gH 0 gP ( g . g , g * h h8 h@ hH hP hp hx h B h h h h h h h h h
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p p0 p@@Z . & l X ` Z @A l 0 ' B Proteins Species to display : $Colour residues that match a species Species: species $ ' A f ' B us B ment o Species Proteins to display : $Colour residues that match a protein Protein : protein $ ' ' ( A f x Z x ' 'R Z @ !8 .4 Z . ( ( ( ! (H ( Z ' % % ! B ' / @ (Z4 Bl ! P @ (Z Z ! !f Identical amino acids ' a p ' h ` ! !f ! B ' % ! !f % ' % ' A " T E h ! !
B % hp Z Z 8 Z p ' Z ' Z Z % % ! !f th ! % ~ @ @ % ! !f in ' hh + wo + % R 4 ,B ' ' h h Z Z ( Z @ ' ' ' Displaying alignment... d Bn zi Z X $ % 'J J d Bf Z p . ' J modif Z ' ' on $ % $ - $ % $ X $ % $ s di ' h h 'pr P ' Z Z ' $ % $ 'V V R 4 ,B con V X lt R 4 %B !| (~ ! V - b R 4 %B !| (~al a ! ! bbest a +
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R 'RZ h ' R 'RZ ' + Z $ % R 4 ,B 'Z h h d B '^ ' $ X R 4 %H @B \ R 'R h@ 8 h0 ' h f ' Z 8 'R Z P @ !8 .4 B Z p . / Z Z ' % $ % ! B '- 0 @ (Z Bl \ ! @ (Z '\ Z ! !f Identical amino acids \ ' a ' h ! !f B ' % ! !f % ' ( ' % ! !f % ! !f ' Z Z Z % R 4 ,B ' ' ' Z % 'J J d Bf Displaying analysis... d Bn J Z 8 % $ - % $ X % $ ' ah ' hX % $ R 4 ,B % 2 R 4 %B !| (~ % < b # R 4 %B !| (~ % F b R 4 %B !| (~ % P b + R 4 %B !| (~ % Z b 2 R 4 %B !| (~ % d b
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' ! ! F R 'R g R 'R hh h` d B H ' h8 0 f( P ' Z 'R Z @ !8 .4 B Z . / @ (Z Bl ! @ (Z Z ! !f Identical amino acids ' a( ' h B Z ' % ! %0 % ' Z 8 ! !f ! !f $ ' Z P Z Z ' Z ' Z Z ! !f Any species Z % ! % ~ % ~ % ' @ P @ p + + % R 4 ,B ' ' h a % ! !f % ! % ~ @ @ + + % R 4 ,B ' ' h h Z Z Z Z ' ' ' Z $ % 'J J d Bf Displaying grouped proteins... d Bn J Z 0 ' ' $ % $ - $ % $ X ' h@ ' ( Z H ' Z ` ' % ! % ~ % % % ' hH % % % b ' h $ % $ R 4 ,B R 4 %B !| (~ R 4 %B !| (~ a - R 4 %B !| (~ h h ' '
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x Z
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' Z ' Z Z 0 ! !f Any species Z H % ! !f ! % ~ % ~ % ' @ x @ + + % R 4 ,B ' ' h a % ! !f % ! !f ! % ~ @ @ + + % R 4 ,B ' ' h h Call SetUpPage Z Z Z ' ' ' Z ( $ % 'J J d Bf Displaying grouped proteins... d Bn J Z @ ' ' $ % $ - $ % $ X ' h ' Z X $ % $ 'V V R 4 ,B R 4 %B !| (~ R 4 %B !0 (~ V X R 4 %B !| (~ a Z p % $ % % % ! R 4 %B !| (~ a8 % d R 4 %B !| (~ % W
b . R 4 %B !| (~ % K b - R 4 %B !| (~ % >
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b % R 4 %B !| (~ a " R 4 %B !| (~ h h h h % ' hh ` hX P ' '
' ' h B
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'R ' ! !f B J d Bf
Importance R 4 ,B ' ' ' Displaying analysis... d Bn J Z % $ - % $ X % $ ' a> ' h> % $ R 4 ,B % 2 R 4 %B !| (~ % < b " R 4 %B !| (~ I 35 % F b % R 4 %B !| (~ I 4 % P b ! R 4 %B !| (~ I 43 % Z b ) R 4 %B !| (~ I 50 % d b R 4 %B !| (~ H 10 R 4 %B !0 (~ a P > 4 %B %> D 9B 9F J 9~ n$ # 8 '< <
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h h * If no matching was found, start a new one p R R@P R 2P p R $P (p r R $P (r ?X R $P ( ?h R 'R h Z < Now add the amino acids to the sequence, one cell at a time l R l %B 'V V A ? V $ $0 'V V F - 'V g j @ & Special code used when inserting gaps @ l !F R !D R !D !H !J p $P ( p $P !b '^Ax hx hp p $P !b V p $P (b B p $P ! p $P (Bh j & p $P ! R l %B !| !~ R l %B !0 !l p $P B C j b R l %B !0 !l p $P B C hp h h` R 'R R d@B 8 j F !L !J '` g Ar j A D j & Special code used when inserting gaps ^ D Z Z R Z $P .t t ! t !b ^ $ ` - $^ t !b ^ $ t (b a t !b ^ ` $ ` - $^ t !b ^ ` $ t (bF h Z t !b ^ ` GH ` t % ` t % t B P t ! ^ ^ ` t B a ^ ` ^ ` t B h h h 'V vx lp 0 Z Z Z Z Z )Call Status.SetAction("Removing gaps...") $ 'x x
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R $ $P (r a $ $P (p h a R Unspecified $P (r aH Unspecified $P (p h h h R $P !r 'r r $ $0 r $ 'r r Homo sapiens H Q E Human 'r Mus musculus H Q E Mouse 'r Rattus norvegicus H Q E Rat 'r
Ovis aries H Q E Sheep 'r
Bos taurus H Q E Cow 'r
Sus scrofa H Q E Pig 'r
Gallus gallus H Q E Chicken 'r Chick H Q E Chicken 'r Canis familiaris H Q E Dog 'r Xenopus H Q E Frog 'r Pan troglodytes H Q E
Chimpanzee 'r Chimp H Q E
Chimpanzee 'r Callithrix Jacchus H Q E Marmoset 'r Capra hircus H Q E Goat 'r Danio rerio H Q E Zebrafish 'r Dasypus novemcinctus H Q E Armadillo 'r
Fugu rupribes H Q E
Pufferfish 'r Takifugu rupribes H Q E
Pufferfish 'r Gasterosteus aculeatus H Q E Stickleback 'r Macaca mulatta H Q E Macaque monkey 'r Monodelphis domestica H Q E Opossum 'r Oncorhynchus mykiss H Q E
Rainbow trout 'r Oryctolagus cuniculus H Q E Rabbit 'r Otolemur garnetti H Q E Bushbaby 'r Papio anubis H Q E Baboon 'r Rhinolophus ferrumequinum H Q E Bat 'r Squallus acanthius H Q E Shark 'r Tetraodon nigroviridis H Q E Spotted green pufferfish 'r Trichosurus vulpecula H Q E Possum 'r Cervus elaphus H Q E Elk 'r k( r $P (r l !X Z ! Z ! Z ! Z " 'J Z F A g 8
8 8 ' $ $T % $T % $T % $T % ' h J $ 'J J 8 8 8 'J h p f h " Parsing text... d Bn Z " ' d Bf Z " '. P Z " Z # ' R@P #0 R 2P R 'R ' F $ $ ' g ' ' F $ $ ' g ? $ > F P g ' ' F $ $
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' g 8 ' F $ > ' g ' F $ $ ' g ' ' F $ $ ' g 7 $ > $ R $P !b $ $0 R $P (b h6x ' h6` ' F $ > ' g 6 Z $ R $P ! ' A R $P ( d B 5 '. P5 . F AZ g . ' f5 % 5p Z %H Sequences @ !b !d %, .4 58 50 @ !b !d %f .4 Sequences 4 ( Protein 4 ,B Species 4 ,B Comment 4 ,B 4 %H !0 (4 4 %H !0 (l $B $B 4 %> !0 (4 $B $B 4 %> (, B (j 1:3 $H (j * A:C $L (, * $H (, D4 4 %> @BJ
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Begin {C62A69F0-16DC-11CE-9E98-00AA00574A4F} ConservationOptions
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', ! ! ' ! b DE ' ! b ANCQGILMSTVRKDE ' ! b GILV ' ! b FWY ' ! b RK ' ! b ACILMFWV ' ! b RDEK ' " ! b HFPWY ' $ ! b CILMFPWYV ' $ AG & ! b HQILMFWYRKE ' ( ! b NDCPTV ' * ! b DE ' , ! b HANCQGILMFPSTWYV ' . ! b RNDEQHKST ' 0 ! b RK ' 2 ! b AGS ' 4 ! b RNDEQGHKPSTY ' hh h` @A b ! A a ' A h b ' 3 ? K W c ! ! ! ! ! ! ! ! ! " ! $ ! & ! ( ! * ! , ! . ! 0 ! 2 ! 4 ! A a ' A h b A ah ' A hP aH A h0 l( @ Next >> P (H l Next >> P (H l Finish P (H l Next >> P (H l @ Finish P (H l ` Next >> P (H l 8 Next >> P (H l Finish P (H l( @ Next >> P (H l Finish P (H l Next >> P (H l Next >> P (H l @ Finish P (H l` Next >> P (H l8 Next >> P (H l Finish P (H l @ Next >> P (H l Next >> P (H l Next >> P (H lp Next >> P (H lH @ Next >> P (H l Finish P (H l Next >> P (H l Next >> P (H l @ Next >> P (H l Finish P (H lX Finish P (H l0
A Ala Alanine L B R Arg Arginine L B N Asn Asparagine L B D Asp Aspartic acid L B C Cys Cysteine L B Q Gln Glutamine L B E Glu Glutamic acid L B
G Gly Glycine L B H His Histidine L B I Ile Isolucine L B
L Leu Leucine L B K Lys Lysine L B M Met Methionine L B F Phe Phenylanine L B
P Pro Proline L B S Ser Serine L B T Thr Threonine L B Y Tyr Tyrosine L B V Val Valine L B W Trp Tryptophan L B ColourWizard_Acids $" ' Z @ $ L !. $ L %0 $ ~
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